View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_2D_low_13 (Length: 298)

Name: NF0493_2D_low_13
Description: NF0493_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_2D_low_13
NF0493_2D_low_13
[»] chr5 (6 HSPs)
chr5 (1-284)||(15802791-15803074)
chr5 (29-284)||(20838540-20838795)
chr5 (29-284)||(20812185-20812440)
chr5 (1-272)||(30417700-30417971)
chr5 (22-172)||(12599202-12599352)
chr5 (232-284)||(12599090-12599142)
[»] chr8 (14 HSPs)
chr8 (1-284)||(3391574-3391857)
chr8 (1-284)||(3364049-3364332)
chr8 (29-275)||(3398567-3398813)
chr8 (2-276)||(31175728-31176002)
chr8 (1-284)||(3407361-3407644)
chr8 (2-284)||(3314739-3315021)
chr8 (4-284)||(3286553-3286833)
chr8 (3-172)||(7164802-7164972)
chr8 (32-284)||(3262665-3262916)
chr8 (22-276)||(3267244-3267498)
chr8 (3-284)||(3325038-3325319)
chr8 (22-172)||(3374979-3375129)
chr8 (41-172)||(13808625-13808756)
chr8 (226-275)||(7164699-7164748)
[»] chr3 (2 HSPs)
chr3 (1-282)||(6905846-6906127)
chr3 (3-281)||(32411124-32411399)
[»] chr2 (1 HSPs)
chr2 (3-282)||(14766987-14767266)
[»] scaffold0468 (1 HSPs)
scaffold0468 (28-284)||(6184-6440)
[»] chr7 (2 HSPs)
chr7 (1-172)||(8371809-8371980)
chr7 (100-140)||(36213891-36213931)
[»] chr6 (7 HSPs)
chr6 (229-284)||(5102532-5102587)
chr6 (229-277)||(5344969-5345017)
chr6 (232-284)||(5354532-5354584)
chr6 (229-284)||(5096816-5096871)
chr6 (98-137)||(5447564-5447603)
chr6 (232-284)||(5181845-5181897)
chr6 (226-278)||(5434140-5434192)
[»] chr4 (3 HSPs)
chr4 (229-284)||(4320537-4320592)
chr4 (206-272)||(4123869-4123935)
chr4 (226-284)||(4361182-4361240)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 15802791 - 15803074
Alignment:
Q  1 ccgtccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtga 100  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15802791 ccgtccattggagatctcaacaatcttcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtga 15802890  T
Q  101 aaactctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15802891 aaactctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagt 15802990  T
Q  201 caaacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15802991 caaacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatataaaggattatcacatgatgt 15803074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 29 - 284
Target Start/End: Original strand, 20838540 - 20838795
Alignment:
Q  29 ttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaaactctcatcctttctggttgttcaaa 128  Q
    ||||||||||||||| ||||||||  ||||||  ||||||||||||||||||||||||||||| | | ||||||||||| || |||||||||||||||||    
T  20838540 ttctgataaatttgagggactgtaaaagtcttgccaatctcccaagagagatctatcaattgatatcggtgaaaactcttattctttctggttgttcaaa 20838639  T
Q  129 gattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagtcaaacaagtgcctttttcgatcgtcaga 228  Q
    |||||| ||||| || ||||||||| |||||||||||||||||| | ||||||| |||||||||||| |  ||||||||||||| | ||| || |  |||    
T  20838640 gattgagaaattggaagaagatataatgcaaatggaatccttgacagctctaattgcagcaaatactggtatcaaacaagtgccctattcaatagcaaga 20838739  T
Q  229 tcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20838740 tcaaaaagcattggatatatatcactatgtggatatgaaggattatcacatgatgt 20838795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 29 - 284
Target Start/End: Original strand, 20812185 - 20812440
Alignment:
Q  29 ttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaaactctcatcctttctggttgttcaaa 128  Q
    ||||||||||||||| ||||||||  ||||||  |||||||||||||||||||||| |||||| | | ||||||||||| || |||||||||||||||||    
T  20812185 ttctgataaatttgagggactgtaaaagtcttgccaatctcccaagagagatctataaattgatatcggtgaaaactcttattctttctggttgttcaaa 20812284  T
Q  129 gattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagtcaaacaagtgcctttttcgatcgtcaga 228  Q
    |||||| || || || ||||||||| |||||||||||||||||| | ||||||| |||||||||||| |  ||||||||||||| | ||| || |  |||    
T  20812285 gattgagaagttggaagaagatataatgcaaatggaatccttgacagctctaattgcagcaaatactggtatcaaacaagtgccctattcaatagcaaga 20812384  T
Q  229 tcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||||||||| ||||||    
T  20812385 tcaaaaagcattgcatatatatcactatgtggatacgaaggattatcacgtgatgt 20812440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 30417700 - 30417971
Alignment:
Q  1 ccgtccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtga 100  Q
    |||||||||||||||  ||| ||||| |||||||||||||| ||||| ||||| |||||| ||||||| ||||||||||| | ||||||||   | ||||    
T  30417700 ccgtccattggagatctcaataatcttcttctgataaattttaaggattgtacaagtcttggcaatctaccaagagagatatctcaattgatgtctgtga 30417799  T
Q  101 aaactctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagt 200  Q
     ||||||||| |||  |||||||||||| |||    |||| || |||||| || |||||||| |||||||||||||||||||||||||||  ||| |  |    
T  30417800 caactctcatacttgatggttgttcaaacattactgaattggaagaagatgtagtgcaaatgaaatccttgaaaactctaatggcagcaagaactggtat 30417899  T
Q  201 caaacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggatt 272  Q
      || |||  |||||||| || || || || ||||||||||  |||||||| || ||||||| |||||||||    
T  30417900 agaaaaagcacctttttccatagttagttcgaaaagcattgtttatatatccctgtgtggatttgaaggatt 30417971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 12599352 - 12599202
Alignment:
Q  22 aatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaaactctcatcctttctggtt 121  Q
    ||||| |||||| | ||||| ||||||||||| ||||||| |||||||||| | |||||||||||||||| |||  |||||||||| || ||||||||||    
T  12599352 aatctacttctgttgaatttcaaggactgtacaagtcttaccaatctcccacgggagatctatcaattgaaaactttgaaaactcttatactttctggtt 12599253  T
Q  122 gttcaaagattgacaaattagacgaagatatattgcaaatggaatccttga 172  Q
    |||||||||||  ||| || || ||||| ||| | || |||||||||||||    
T  12599252 gttcaaagattagcaagttggaagaagacatagtacagatggaatccttga 12599202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 12599142 - 12599090
Alignment:
Q  232 aaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    ||||||||||||||||||||  | |||||||||||||||||||||| ||||||    
T  12599142 aaaagcattggatatatatccttgtgtggatatgaaggattatcacgtgatgt 12599090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 3391857 - 3391574
Alignment:
Q  1 ccgtccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtga 100  Q
    |||||||||||||||  ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3391857 ccgtccattggagatctcaagaatcttcttctgttaaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgg 3391758  T
Q  101 aaactctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagt 200  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  3391757 aaactctcatcctttctggttgttcaaagattgacaaattggaagaagatatagtgcaaatggaatccttgacaactctaatggcagcaaatactggagt 3391658  T
Q  201 caaacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    |||||||   || |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3391657 caaacaaccaccattttcgatagtgagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgt 3391574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 3364049 - 3364332
Alignment:
Q  1 ccgtccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtga 100  Q
    |||||||||||||||  ||| ||||| ||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||     
T  3364049 ccgtccattggagatctcaagaatcttcttatgttaaatttgaaggactgtacgagtcttggcaatctcccaagagagatctatcaattgagaagagtgg 3364148  T
Q  101 aaactctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagt 200  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  3364149 aaactctcatcctttctggttgttcaaagattgacaaattggaagaagatatagtgcaaatggaatccttgacaactctaatggcagcaaatactggagt 3364248  T
Q  201 caaacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    |||||||   || |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3364249 caaacaaccaccattttcgatagtgagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgt 3364332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 29 - 275
Target Start/End: Complemental strand, 3398813 - 3398567
Alignment:
Q  29 ttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaaactctcatcctttctggttgttcaaa 128  Q
    ||||||||||||||| ||||||||| ||||||  ||||||||||||||||||||||||||||| | ||||||||||||||||  ||||||||||||||||    
T  3398813 ttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcaattgaaatcagtgaaaactctcattatttctggttgttcaaa 3398714  T
Q  129 gattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagtcaaacaagtgcctttttcgatcgtcaga 228  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||||||||| |||||||||||| | ||||||||||| ||||||||||| || |||    
T  3398713 gattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagcaaatactggtgtcaaacaagttcctttttcgattgttaga 3398614  T
Q  229 tcaaaaagcattggatatatatctctatgtggatatgaaggattatc 275  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  3398613 tcaaaaagcattgcatatatatctctatgtggatataaaggattatc 3398567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 2 - 276
Target Start/End: Original strand, 31175728 - 31176002
Alignment:
Q  2 cgtccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaa 101  Q
    ||||||||||||||  ||| ||||| ||| |||||||||| ||||||||||| |||||| |||||||||||| |||| ||||| || ||||| |||||||    
T  31175728 cgtccattggagatctcaagaatcttcttttgataaattttaaggactgtacaagtcttggcaatctcccaaaagaggtctataaagtgagatcagtgaa 31175827  T
Q  102 aactctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagtc 201  Q
    || |||||| |||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| |||| |||| |||||||||||| |  ||    
T  31175828 aagtctcattctttctggttgttcaatgattgacaaattggaagaagatatattgcaaatggaatccttgacaactttaattgcagcaaatactggtatc 31175927  T
Q  202 aaacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggattatca 276  Q
    ||||||||||| | ||| || |  |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31175928 aaacaagtgccctattcaatagcaagatcaaaaagcattgcatatatatctctatgtggatatgaaggattatca 31176002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 3407644 - 3407361
Alignment:
Q  1 ccgtccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtga 100  Q
    |||||||||||||||  ||| ||||| ||||| |||||||||||||| ||| | ||||||   |||||||||||||||||||||| ||||||| ||||||    
T  3407644 ccgtccattggagatctcaagaatcttcttctcataaatttgaaggattgtgcaagtcttgttaatctcccaagagagatctatcgattgagatcagtga 3407545  T
Q  101 aaactctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagt 200  Q
    ||||||||||||||||||||||||||||||||| |||||| || ||||||||| |||||||| ||||||||| ||||||||| |||| |||| || | ||    
T  3407544 aaactctcatcctttctggttgttcaaagattgtcaaattggaagaagatatagtgcaaatgaaatccttgacaactctaattgcagaaaatgctggtgt 3407445  T
Q  201 caaacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    ||||||||||||||||||||| || |||||||| | |||     |||||||||||||||||||| |||||||||||| ||||||    
T  3407444 caaacaagtgcctttttcgattgttagatcaaagaacatcacccatatatctctatgtggatatcaaggattatcacgtgatgt 3407361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 2 - 284
Target Start/End: Original strand, 3314739 - 3315021
Alignment:
Q  2 cgtccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaa 101  Q
    ||||||||||||||  ||| || || || ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| | | |||||    
T  3314739 cgtccattggagatctcaagaagcttctcctgataaatttcaaggactgtacaagtcttagaaatctcccaagagagatctatcaattgacatcggtgaa 3314838  T
Q  102 aactctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagtc 201  Q
    |||| |||| ||||||||||||||||||||||| ||||| || ||||||||| |||||||| |||| |||| ||| ||||| |||||||| ||| | |||    
T  3314839 aactttcattctttctggttgttcaaagattgaaaaattggaagaagatatagtgcaaatgaaatcattgacaaccctaattgcagcaaaaactggtgtc 3314938  T
Q  202 aaacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    |||||||| ||||||||||| || | |||||||| ||||||||||||||| ||||||| ||||||||| ||||||| ||||||    
T  3314939 aaacaagttcctttttcgattgttaaatcaaaaaacattggatatatatccctatgtgaatatgaaggtttatcacgtgatgt 3315021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 3286833 - 3286553
Alignment:
Q  4 tccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagag-atctatcaattgagaacagtgaaa 102  Q
    ||||||||||||  ||| || || ||| || ||||||||||||||||||   |||||||||||||||||| |||| ||||||||| ||| | |  ||||     
T  3286833 tccattggagatctcaataaacttcttatgttaaatttgaaggactgtataggtcttagcaatctcccaa-agagtatctatcaactgaaatctttgaac 3286735  T
Q  103 actctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagtca 202  Q
    ||||||||||||||||||||||||||||||||||| || || ||||| ||| |||| ||||||||||||| ||| || || |||   |||||    || |    
T  3286734 actctcatcctttctggttgttcaaagattgacaagttggaagaagacatagtgcagatggaatccttgacaacactgattgcaaataatacagctgtta 3286635  T
Q  203 aacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    || ||||||| ||||| || || ||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||    
T  3286634 aagaagtgcccttttcaattgtaagatcaaaaagcatcagatatatatccctatgtggatatgaaggattatcacatgatgt 3286553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 7164972 - 7164802
Alignment:
Q  3 gtccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaa-ttgagaacagtgaa 101  Q
    |||||||||||||  ||| ||| | || || |||||||||||||||||||| ||||||||||||||||||||  | ||||||||| |||| | || ||||    
T  7164972 gtccattggagatctcaagaatgttctactaataaatttgaaggactgtacaagtcttagcaatctcccaaggaatatctatcaagttgaaatcattgaa 7164873  T
Q  102 aactctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttga 172  Q
    |||||||||||||||||||||||||||||||| | | || || ||||| ||| |||| ||| |||||||||    
T  7164872 aactctcatcctttctggttgttcaaagattgcctagttggaagaagacataatgcagatgaaatccttga 7164802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 32 - 284
Target Start/End: Complemental strand, 3262916 - 3262665
Alignment:
Q  32 tgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaaactctcatcctttctggttgttcaaagat 131  Q
    |||||||||||||||||||||  ||||||   ||||||||||   | || || ||||||| | |  ||||||||||||| ||||||||||| ||||||||    
T  3262916 tgataaatttgaaggactgtagaagtcttcaaaatctcccaaagaatatataccaattgaaatctttgaaaactctcatactttctggttgctcaaagat 3262817  T
Q  132 tgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagtcaaacaagtgcctttttcgatcgtcagatca 231  Q
    ||||||||| || ||||| ||| |||| ||||||||||||| ||| || || |||    ||||  | || ||| | ||||| | ||| || || ||||||    
T  3262816 tgacaaattggaagaagacatagtgcagatggaatccttgacaacactgattgcaaaggatacaggtgtgaaagaggtgccctattcaatagtaagatca 3262717  T
Q  232 aaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||| ||||||    
T  3262716 aaaagcattggatatatatccctatgtggatatg-aggattttcacgtgatgt 3262665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 3267498 - 3267244
Alignment:
Q  22 aatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaaactctcatcctttctggtt 121  Q
    ||||| ||||||||||||||||| || ||||| |||||||||||||||||||   ||||  |||||||||   |  ||| |||||||||| |||||||||    
T  3267498 aatcttcttctgataaatttgaaagattgtacaagtcttagcaatctcccaaagaagataaatcaattgaagtctttgacaactctcatcatttctggtt 3267399  T
Q  122 gttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagtcaaacaagtgcctttttcgat 221  Q
    |||||||||||||||| ||||| ||||  ||| |||| ||||||||||| | ||| ||  |   |  | ||||  | || ||| | ||||| | |||  |    
T  3267398 gttcaaagattgacaagttagaagaaggcatagtgcagatggaatccttaacaacactggtcataaaagatacaggtgtgaaagaggtgccgtattcagt 3267299  T
Q  222 cgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggattatca 276  Q
     || ||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  3267298 ggtaagattgaaaagcatcggatatatatctctatgtggatatgaaggattatca 3267244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 3 - 284
Target Start/End: Complemental strand, 3325319 - 3325038
Alignment:
Q  3 gtccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaa 102  Q
    |||||||||||||  ||| || || ||| || | ||||||||||||||| | |||||||| ||||||||| | |||||||||||||||| | |  || ||    
T  3325319 gtccattggagatctcaagaaccttcttttgttgaatttgaaggactgtgcaagtcttagaaatctcccaggggagatctatcaattgaaatctttggaa 3325220  T
Q  103 actctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagtca 202  Q
    ||||| ||  | ||||||||||||||||||||||| || || |||| | |   ||| ||||||||||||| ||| || || ||   | ||||    || |    
T  3325219 actcttatattatctggttgttcaaagattgacaagttggaagaaggtttcgggcagatggaatccttgacaacgctgattgctaaagatacatctgtaa 3325120  T
Q  203 aacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    ||||||| |||| ||| ||  | |||| ||||||||||||||||||||| || ||||||||||||||| ||||||| |||||    
T  3325119 aacaagttccttattcaatactaagattaaaaagcattggatatatatccctctgtggatatgaaggactatcacacgatgt 3325038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 3374979 - 3375129
Alignment:
Q  22 aatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaaactctcatcctttctggtt 121  Q
    ||||| |||||| | ||||| || |||||||| ||||||| |||||||||||| | ||||||||| |||| |    |||||||||| || ||||||||||    
T  3374979 aatctacttctgttgaatttcaaagactgtacaagtcttaccaatctcccaagggtgatctatcatttgaaacttttgaaaactcttatactttctggtt 3375078  T
Q  122 gttcaaagattgacaaattagacgaagatatattgcaaatggaatccttga 172  Q
    ||||||||||| |||| || || ||||| ||| |||| |||||||||||||    
T  3375079 gttcaaagattaacaagttggaagaagacataatgcagatggaatccttga 3375129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 13808625 - 13808756
Alignment:
Q  41 tgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaaactctcatcctttctggttgttcaaagattgacaaatt 140  Q
    ||||||||||||| ||||||  || |||||||   | ||| ||||| |||| | || |||||||||| ||| ||||||||||||||||||||||||| ||    
T  13808625 tgaaggactgtacaagtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagtt 13808724  T
Q  141 agacgaagatatattgcaaatggaatccttga 172  Q
     || ||||| ||| | || |||||||||||||    
T  13808725 ggaagaagacatagtccagatggaatccttga 13808756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 7164748 - 7164699
Alignment:
Q  226 agatcaaaaagcattggatatatatctctatgtggatatgaaggattatc 275  Q
    ||||||||||||||||||||  |||| |||||| |||||||||| |||||    
T  7164748 agatcaaaaagcattggatacttatccctatgtagatatgaagggttatc 7164699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 6906127 - 6905846
Alignment:
Q  1 ccgtccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtga 100  Q
    ||||||||||||| |  ||| || || |||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||||||  ||| | | ||||    
T  6906127 ccgtccattggagttctcaagaagcttcttctgataaatttgaaggactgtacaagtcttggcaatctaccaagggagatctatcagctgatatctgtga 6906028  T
Q  101 aaactctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagt 200  Q
    |||||||||| |||| |||||||||||||||||||||||| || ||||||||| |||||||| ||||||||| ||||||| | |||||||||||| | ||    
T  6906027 aaactctcattctttttggttgttcaaagattgacaaattggaggaagatatagtgcaaatgaaatccttgacaactctagttgcagcaaatactggcgt 6905928  T
Q  201 caaacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgat 282  Q
    ||||||||  || ||||| || || ||||||||||||||||  |||||||| ||||| ||||||||||||||||||| ||||    
T  6905927 caaacaagcacccttttccattgttagatcaaaaagcattgtgtatatatccctatgcggatatgaaggattatcacgtgat 6905846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 281
Target Start/End: Complemental strand, 32411399 - 32411124
Alignment:
Q  3 gtccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaa 102  Q
    |||||||||| ||  ||| | ||| |||||||||||||||||||||||||| ||||||| || ||||||||   |||| |||||||||| | |  |||||    
T  32411399 gtccattggaaatctcaatagtcttcttctgataaatttgaaggactgtacaagtcttaacagtctcccaaagaagatatatcaattgaaatctttgaaa 32411300  T
Q  103 actctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagtca 202  Q
    |||||||||||||||||||||||||||||||| || ||    ||||| ||| ||||||||||||| |||| ||| || || |||  | ||||  | || |    
T  32411299 actctcatcctttctggttgttcaaagattgaaaactt---ggaagaaatagtgcaaatggaatcgttgacaacactgattgcaaaagatacaggtgtaa 32411203  T
Q  203 aacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatga 281  Q
    || | ||||| | ||| || || ||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  32411202 aagaggtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatcacatga 32411124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 3 - 282
Target Start/End: Complemental strand, 14767266 - 14766987
Alignment:
Q  3 gtccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaa 102  Q
    |||||||||||||  ||| ||| | ||||| |||||||||||||||||||| ||||||   |||||||||||||||||||||||||||| | |  |||||    
T  14767266 gtccattggagatctcaagaatgttcttctcataaatttgaaggactgtacaagtcttgaaaatctcccaagagagatctatcaattgaaatctttgaaa 14767167  T
Q  103 actctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagtca 202  Q
    |||||||||||||| || |||||||||||||||||||| || ||||||||  |||||||||||||||||| | | || || ||| |||||||     | |    
T  14767166 actctcatcctttccggctgttcaaagattgacaaattggaagaagatattgtgcaaatggaatccttgacatcactgattgcaacaaatacatctataa 14767067  T
Q  203 aacaagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgat 282  Q
    || |||| || | ||| ||  | |||| ||||||||||||||||||||| |||||||| |||||||||||||| ||||||    
T  14767066 aagaagttccatattcaatactaagattaaaaagcattggatatatatccctatgtggttatgaaggattatcgcatgat 14766987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 28 - 284
Target Start/End: Complemental strand, 6440 - 6184
Alignment:
Q  28 cttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaaactctcatcctttctggttgttcaa 127  Q
    |||||||| ||||||||||| ||||| |||||| ||||||| ||||| |||||||||||  ||| | | ||||||||||| ||||||| |||||||||||    
T  6440 cttctgattaatttgaaggattgtacaagtcttggcaatctaccaagggagatctatcagctgatatctgtgaaaactcttatcctttttggttgttcaa 6341  T
Q  128 agattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagtcaaacaagtgcctttttcgatcgtcag 227  Q
    |||| |||||||| || ||||||||| |||||||| |||| ||||  ||| || | |||||||||||| |  |||||||||  || ||||| ||  | ||    
T  6340 agatcgacaaattggaagaagatatagtgcaaatgaaatctttgacgactttagttgcagcaaatactggcatcaaacaagcacccttttccatatttag 6241  T
Q  228 atcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    ||||||||||||||  |||||||| ||||| ||||||||||||||||||| ||||||    
T  6240 atcaaaaagcattgtgtatatatccctatgcggatatgaaggattatcacgtgatgt 6184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 8371980 - 8371809
Alignment:
Q  1 ccgtccattggagatgacaacaatctgcttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtga 100  Q
    |||||||||||||||  ||| ||||| ||||| |||||||| ||||||||||  | ||||   |||||||||||||||||||||||||||| | | ||||    
T  8371980 ccgtccattggagatctcaagaatcttcttctcataaatttaaaggactgtataattcttgaaaatctcccaagagagatctatcaattgaaatcggtga 8371881  T
Q  101 aaactctcatcctttctggttgttcaaagattgacaaattagacgaagatatattgcaaatggaatccttga 172  Q
    |||||||||||||| | || ||||||| |||||||||||| || ||||||||| |||| ||||| |||||||    
T  8371880 aaactctcatccttacgggctgttcaacgattgacaaattggaagaagatatagtgcagatggagtccttga 8371809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 36213931 - 36213891
Alignment:
Q  100 aaaactctcatcctttctggttgttcaaagattgacaaatt 140  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  36213931 aaaactctcattctttctggatgttcaaagattgacaaatt 36213891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 5102587 - 5102532
Alignment:
Q  229 tcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    |||||||||||||||||||| ||||||||||| ||||||||| | |||||||||||    
T  5102587 tcaaaaagcattggatatatctctctatgtggctatgaaggactttcacatgatgt 5102532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 5344969 - 5345017
Alignment:
Q  229 tcaaaaagcattggatatatatctctatgtggatatgaaggattatcac 277  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||| ||||    
T  5344969 tcaaaaagcattggatatatttctctgtgtggctatgaaggattctcac 5345017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 5354584 - 5354532
Alignment:
Q  232 aaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    ||||||||||||||||| ||| ||||||| ||||||||||| |||| ||||||    
T  5354584 aaaagcattggatatatttctttatgtggctatgaaggattctcacgtgatgt 5354532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 5096816 - 5096871
Alignment:
Q  229 tcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    ||||||||||||||||| || |||||||||||  |||||||||| |||| ||||||    
T  5096816 tcaaaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgt 5096871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 5447564 - 5447603
Alignment:
Q  98 tgaaaactctcatcctttctggttgttcaaagattgacaa 137  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  5447564 tgaaaactctcattctttctggttgtttaaagattgacaa 5447603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 5181897 - 5181845
Alignment:
Q  232 aaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    |||||||||| |||||| ||  | ||||||||||||||||| |||||||||||    
T  5181897 aaaagcattgcatatatttccttgtgtggatatgaaggattctcacatgatgt 5181845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 5434140 - 5434192
Alignment:
Q  226 agatcaaaaagcattggatatatatctctatgtggatatgaaggattatcaca 278  Q
    ||||||||||||||||||||||| ||| | || || ||||||||||| |||||    
T  5434140 agatcaaaaagcattggatatatctctttgtgcggttatgaaggattctcaca 5434192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 4320592 - 4320537
Alignment:
Q  229 tcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||| |||| ||||||    
T  4320592 tcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgt 4320537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 4123935 - 4123869
Alignment:
Q  206 aagtgcctttttcgatcgtcagatcaaaaagcattggatatatatctctatgtggatatgaaggatt 272  Q
    ||||||| |||||| | || || |||||||||||||||| ||| ||||| |||||||||||||||||    
T  4123935 aagtgcccttttcggtagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggatt 4123869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 4361182 - 4361240
Alignment:
Q  226 agatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatgatgt 284  Q
    ||||||||| ||||||||| ||| ||| | ||||||||||||||||| |||| ||||||    
T  4361182 agatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgt 4361240  T

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