View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_2D_low_23 (Length: 209)

Name: NF0493_2D_low_23
Description: NF0493_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_2D_low_23
NF0493_2D_low_23
[»] chr2 (10 HSPs)
chr2 (19-209)||(40016727-40016917)
chr2 (72-157)||(27151060-27151145)
chr2 (50-135)||(44921127-44921212)
chr2 (63-135)||(30267186-30267258)
chr2 (20-157)||(7702565-7702707)
chr2 (19-151)||(24479287-24479424)
chr2 (50-156)||(15513836-15513941)
chr2 (101-209)||(31481004-31481114)
chr2 (64-136)||(31342560-31342632)
chr2 (65-107)||(7718371-7718412)
[»] chr8 (16 HSPs)
chr8 (50-209)||(14997792-14997953)
chr8 (50-156)||(5528913-5529019)
chr8 (50-137)||(19369753-19369840)
chr8 (50-137)||(19448618-19448705)
chr8 (50-137)||(19532371-19532458)
chr8 (55-144)||(17634307-17634396)
chr8 (50-156)||(12105530-12105636)
chr8 (48-133)||(18767085-18767171)
chr8 (50-151)||(25637813-25637914)
chr8 (90-151)||(29345641-29345702)
chr8 (64-136)||(25638991-25639063)
chr8 (64-136)||(28248923-28248995)
chr8 (64-136)||(45355956-45356028)
chr8 (20-151)||(6223538-6223674)
chr8 (50-127)||(6801677-6801754)
chr8 (83-157)||(5000883-5000956)
[»] chr4 (8 HSPs)
chr4 (48-151)||(27739604-27739705)
chr4 (50-137)||(1684795-1684882)
chr4 (50-136)||(1152214-1152300)
chr4 (81-157)||(37750817-37750893)
chr4 (63-135)||(47065879-47065951)
chr4 (63-135)||(53300537-53300609)
chr4 (64-136)||(43600451-43600523)
chr4 (93-151)||(39074099-39074157)
[»] chr3 (9 HSPs)
chr3 (50-149)||(28745146-28745244)
chr3 (57-156)||(9633267-9633365)
chr3 (64-136)||(1654760-1654832)
chr3 (64-136)||(2550350-2550422)
chr3 (64-136)||(13846176-13846248)
chr3 (63-125)||(1627801-1627863)
chr3 (64-136)||(7407598-7407670)
chr3 (81-148)||(2180128-2180195)
chr3 (77-151)||(25338829-25338903)
[»] chr6 (10 HSPs)
chr6 (50-138)||(17719565-17719653)
chr6 (64-127)||(11936620-11936683)
chr6 (64-127)||(11948600-11948663)
chr6 (50-137)||(14669189-14669276)
chr6 (64-136)||(15361899-15361971)
chr6 (64-136)||(16734989-16735061)
chr6 (63-137)||(6684283-6684357)
chr6 (70-157)||(1942752-1942840)
chr6 (50-105)||(10070824-10070879)
chr6 (50-140)||(12592003-12592093)
[»] chr5 (7 HSPs)
chr5 (71-209)||(38449748-38449888)
chr5 (50-137)||(23616657-23616744)
chr5 (50-137)||(23848054-23848141)
chr5 (64-136)||(5078909-5078980)
chr5 (83-157)||(10869862-10869933)
chr5 (50-135)||(17037713-17037797)
chr5 (86-157)||(42076249-42076317)
[»] chr7 (6 HSPs)
chr7 (50-140)||(20277198-20277288)
chr7 (50-130)||(3374568-3374649)
chr7 (64-127)||(19746806-19746869)
chr7 (64-136)||(4685247-4685319)
chr7 (65-137)||(9242327-9242399)
chr7 (55-135)||(10022286-10022365)
[»] chr1 (6 HSPs)
chr1 (50-137)||(51758923-51759008)
chr1 (77-157)||(18308346-18308426)
chr1 (90-157)||(39367962-39368030)
chr1 (83-157)||(47694716-47694789)
chr1 (85-157)||(17113133-17113205)
chr1 (79-140)||(28637576-28637637)
[»] scaffold0576 (1 HSPs)
scaffold0576 (64-136)||(6883-6955)
[»] scaffold0684 (1 HSPs)
scaffold0684 (50-137)||(590-677)
[»] scaffold0069 (1 HSPs)
scaffold0069 (50-137)||(40541-40628)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 4e-80; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 40016727 - 40016917
Alignment:
Q  19 caaaaagtgtcgtaaaatgttacattataatttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgtta 118  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||    
T  40016727 caaaaagtatcgtaaaatgttacattataatttttagcatcatcagtaacaataaaaaaatattacatttataattttcgagaaattgtaaaatatgtta 40016826  T
Q  119 caaaattgtttagactaaaaaattgtgaatctatcaaaactcttgctgatagagatagattacagaaagtgaattatttataggagttttt 209  Q
    ||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40016827 caaaattgtctaaattaaaaaattgtgaatctatcaaaactcatgctgatagagatagattacagaaagtgaattatttataggagttttt 40016917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 27151145 - 27151060
Alignment:
Q  72 aaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatctatcaaaa 157  Q
    |||| ||| ||||||||||||||||  ||||||||||||| ||||  ||||||| |  |||||||||||||||||||||| |||||    
T  27151145 aaaaaaatattacatttataatttttaagaagttgtaaaaagtgtcgcaaaattatccagactaaaaaattgtgaatctaccaaaa 27151060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 44921127 - 44921212
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagacta 135  Q
    |||| ||||||  ||||||||||||| | |||||||||||||||||| ||||||||||||||  |||  ||||||||| |||||||    
T  44921127 tttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaattgtcgcaaaattgtctagacta 44921212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 30267186 - 30267258
Alignment:
Q  63 agtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagacta 135  Q
    ||||||||||||| | |||||||||||||| |||  ||||||||||||| ||||  |||||||||||||||||    
T  30267186 agtaacaataaaaaagtgttacatttataaattttaagaagttgtaaaaagtgtggcaaaattgtttagacta 30267258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 7702565 - 7702707
Alignment:
Q  20 aaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgt 114  Q
    ||||| ||||||||||||||||||||| ||     |||| ||||||   |||||| |||||   | |||||||||||||||| ||||||||||||||  |    
T  7702565 aaaaattgtcgtaaaatgttacattattataacactttttgtatcactcgtaacactaaaaagttattacatttataatttttgagaagttgtaaaaaat 7702664  T
Q  115 gttacaaaattgtttagactaaaaaattgtgaatctatcaaaa 157  Q
    ||  |||||||||  || ||||||||||||||| ||| |||||    
T  7702665 gtcgcaaaattgtccaggctaaaaaattgtgaaactaccaaaa 7702707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 24479287 - 24479424
Alignment:
Q  19 caaaaagtgtcgtaaaatgttacattata-----atttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatg 113  Q
    ||||||||||||||||| |||||| |||      |||||| ||| || || ||||||| ||| ||| |||||||||| |||||   |||||||||||       
T  24479287 caaaaagtgtcgtaaaaggttacactattgtaacattttttgtaccaccattaacaattaaaaaattttacatttatcatttttatgaagttgtaaacaa 24479386  T
Q  114 tgttacaaaattgtttagactaaaaaattgtgaatcta 151  Q
    |||| ||||||||| ||| |||||||||||||||||||    
T  24479387 tgttgcaaaattgtataggctaaaaaattgtgaatcta 24479424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 15513836 - 15513941
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatc 149  Q
    |||| ||||||  ||||||||| ||| | |||||| ||||||||||| |||||||||||||| ||||  | ||| ||| |  ||||||||||| ||||||    
T  15513836 tttttgtatcactagtaacaattaaaaagtgttacgtttataatttttgagaagttgtaaaaagtgtcgc-aaactgtctcaactaaaaaattttgaatc 15513934  T
Q  150 tatcaaa 156  Q
    |||||||    
T  15513935 tatcaaa 15513941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 101 - 209
Target Start/End: Original strand, 31481004 - 31481114
Alignment:
Q  101 aagttgtaaaatgtgttacaaaattgtttagactaaaa-aattgtgaatctatcaaaa-ctcttgctgatagagatagattacagaaagtgaattattta 198  Q
    ||||| ||||||||||  |||| |||||||| |||||| |||||||||||||||||||  | || ||||| ||  ||||||| | |||||| ||||||||    
T  31481004 aagttataaaatgtgtcccaaagttgtttagtctaaaaaaattgtgaatctatcaaaagatgttactgattgaagtagattaaaaaaagtggattattta 31481103  T
Q  199 taggagttttt 209  Q
    ||||| |||||    
T  31481104 taggatttttt 31481114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 31342632 - 31342560
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | |||||||||||||||||| ||| ||||||||||  |||  ||||||||| || |||||    
T  31342632 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaaatgtcgcaaaattgtctaaactaa 31342560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 7718371 - 7718412
Alignment:
Q  65 taacaataaaagaatgttacatttataattttcgagaagttgt 107  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  7718371 taacaataaaa-aatgttacatttataatttttgagaagttgt 7718412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 14997792 - 14997953
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatc 149  Q
    |||| |||||| | |||||| ||||| |||||||||||||||||||| || ||||||||||| || || |||||||||  ||| ||||||||||||||||    
T  14997792 tttttgtatcaccggtaacactaaaaaaatgttacatttataatttttgataagttgtaaaaagttttgcaaaattgtccagattaaaaaattgtgaatc 14997891  T
Q  150 tatc-aaaactcttgctgatagagatagatta-cagaaagtgaattatttataggagttttt 209  Q
    || | |||| | || || || || ||||||||  | ||||||||||||||||||||||||||    
T  14997892 taccaaaaaatgttactaattgaaatagattagaaaaaagtgaattatttataggagttttt 14997953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 5528913 - 5529019
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatc 149  Q
    |||| ||||||| ||||||||||||| | ||||||| |||||||||| |||||||||||||| ||||  ||||||||| |||||||||   || ||||||    
T  5528913 tttttgtatcattagtaacaataaaaaagtgttacaattataatttttgagaagttgtaaaaagtgtcgcaaaattgtctagactaaatttttttgaatc 5529012  T
Q  150 tatcaaa 156  Q
    |||||||    
T  5529013 tatcaaa 5529019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 19369840 - 19369753
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaa 137  Q
    |||| ||||||  ||||||||||||| | |||||||||||||||||| |||||||||||||| ||||  ||||||||| |||||||||    
T  19369840 tttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaaaattgtctagactaaa 19369753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 19448618 - 19448705
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaa 137  Q
    |||| ||||||  ||||||||||||| | |||||||||||||||||| |||||||||||||| ||||  ||||||||| |||||||||    
T  19448618 tttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaaaattgtctagactaaa 19448705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 19532458 - 19532371
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaa 137  Q
    |||| ||||||  ||||||||||||| | |||||||||||||||||| |||||||||||||| ||||  ||||||||| |||||||||    
T  19532458 tttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaaaattgtctagactaaa 19532371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 17634396 - 17634307
Alignment:
Q  55 gtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgt 144  Q
    |||||| || ||||||||||  |||||| ||||||| ||||| |||||||||||||| ||||| ||||||| | ||||||||||||||||    
T  17634396 gtatcaccaataacaataaataaatgttgcatttatcatttttgagaagttgtaaaaagtgttgcaaaattatctagactaaaaaattgt 17634307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 12105530 - 12105636
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatc 149  Q
    |||| |||||| | ||||||| |||| ||||||||||| || |||||  ||||||||||||| ||||  ||||||||| || || |||||||||||||||    
T  12105530 tttttgtatcaccggtaacaagaaaaaaatgttacattcatcattttttagaagttgtaaaaagtgtcgcaaaattgtctaaaccaaaaaattgtgaatc 12105629  T
Q  150 tatcaaa 156  Q
    || ||||    
T  12105630 taccaaa 12105636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 18767085 - 18767171
Alignment:
Q  48 atttttagtatcatcagtaacaataaaagaa-tgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagac 133  Q
    |||||| ||||||  ||||||||||||| || |||||||||||||||||| |||||||||||||| || || ||||||||| |||||    
T  18767085 attttttgtatcactagtaacaataaaaaaagtgttacatttataatttttgagaagttgtaaaaagtattgcaaaattgtctagac 18767171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 25637813 - 25637914
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatc 149  Q
    |||| ||||||  ||||||||||  | | |||||||||||||||||| |||||||||||||| ||||  ||||||||| ||||||||||  || ||||||    
T  25637813 tttttgtatcactagtaacaatactaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaaaattgtctagactaaaattttttgaatc 25637912  T
Q  150 ta 151  Q
    ||    
T  25637913 ta 25637914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 29345641 - 29345702
Alignment:
Q  90 taattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatcta 151  Q
    ||||||| |||||||||||||| ||||  ||||||||| || ||||||||||||||||||||    
T  29345641 taatttttgagaagttgtaaaaagtgtcgcaaaattgtctaaactaaaaaattgtgaatcta 29345702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 25638991 - 25639063
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||    
T  25638991 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 25639063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 28248995 - 28248923
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||    
T  28248995 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 28248923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 45356028 - 45355956
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||    
T  45356028 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtataaactaa 45355956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 6223538 - 6223674
Alignment:
Q  20 aaaaagtgtcgtaaaatgttacattataat-----ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaat-g 113  Q
    ||||||||||| |||||||||||||||  |     |||| | |||| |||||||| ||||| ||||||||||||  |||||| |||||||| |||||  |    
T  6223538 aaaaagtgtcgcaaaatgttacattattgtaacactttttgaatcaccagtaacactaaaaaaatgttacattttaaatttt-gagaagttataaaaaag 6223636  T
Q  114 tgttacaaaattgtttagactaaaaaattgtgaatcta 151  Q
    |||  ||||||||| | | |||||||||||||||||||    
T  6223637 tgtcgcaaaattgtcttgcctaaaaaattgtgaatcta 6223674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 6801754 - 6801677
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgt 127  Q
    |||| |||||||||||||| |||||  |||||||||||||| ||||| | ||| | |||||| ||||| |||||||||    
T  6801754 tttttgtatcatcagtaaccataaagaaatgttacatttatcatttttgcgaattagtaaaaagtgttgcaaaattgt 6801677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 5000883 - 5000956
Alignment:
Q  83 acatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatctatcaaaa 157  Q
    |||||||||||||| |||| ||||||||| | ||  |||| |||| ||||||||| ||||||||||||| |||||    
T  5000883 acatttataatttt-gagatgttgtaaaaagagtcgcaaagttgtctagactaaacaattgtgaatctaccaaaa 5000956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 27739705 - 27739604
Alignment:
Q  48 atttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaa 147  Q
    |||||| ||||||  | ||||||||||| |||||||||||||||||||| ||| |||||||||| |||| |||||||| | ||||||  |||||||||||    
T  27739705 attttttgtatcaatactaacaataaaaaaatgttacatttataatttttgaggagttgtaaaaagtgtcacaaaattatctagact--aaaattgtgaa 27739608  T
Q  148 tcta 151  Q
    ||||    
T  27739607 tcta 27739604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 1684882 - 1684795
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaa 137  Q
    |||| ||||||  ||||||||||||| | |||||||||||||||||| |||||||||||||| ||||  ||||||||| |||||||||    
T  1684882 tttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaaaattgtctagactaaa 1684795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 1152214 - 1152300
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||| ||||||  ||||||||||||| | |||||||||||||||||| |||||||||||||| ||||  ||||||||| ||||||||    
T  1152214 tttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaaaattgtctagactaa 1152300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 37750893 - 37750817
Alignment:
Q  81 ttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatctatcaaaa 157  Q
    |||||||||||||||| |||||||||||||| || |  ||||||||| |||||||||||||||| |||||| |||||    
T  37750893 ttacatttataatttttgagaagttgtaaaaagtatcgcaaaattgtatagactaaaaaattgtaaatctaccaaaa 37750817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 47065951 - 47065879
Alignment:
Q  63 agtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagacta 135  Q
    ||||||||||||| | |||||||||||||| |||  ||||||||||||| ||||  |||||||||||||||||    
T  47065951 agtaacaataaaaaagtgttacatttataaattttaagaagttgtaaaaagtgtggcaaaattgtttagacta 47065879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 53300537 - 53300609
Alignment:
Q  63 agtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagacta 135  Q
    ||||||||||||| | |||||||||||||| |||  ||||||||||||| ||||  |||||||||||||||||    
T  53300537 agtaacaataaaaaagtgttacatttataaattttaagaagttgtaaaaagtgtggcaaaattgtttagacta 53300609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 43600451 - 43600523
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||    
T  43600451 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 43600523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 39074157 - 39074099
Alignment:
Q  93 ttttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatcta 151  Q
    ||||| |||||||||||||  |||| ||||||||| ||||||||| |||||||||||||    
T  39074157 ttttctagaagttgtaaaaaatgttgcaaaattgtctagactaaataattgtgaatcta 39074099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 28745146 - 28745244
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatc 149  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||| ||||| ||||||||| ||   |||||| |||||||||    
T  28745146 tttttgtatcatcagtaacaataaaa-aatgttacatttatcatttttgagaatttgtaaaaagtgttgcaaaattgtctaacataaaaagttgtgaatc 28745244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 9633365 - 9633267
Alignment:
Q  57 atcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatctatcaaa 156  Q
    |||| |||||||| ||||| |||||| ||||||| ||||| ||||||||| |||| ||||  ||||||||| |||| |||||||||||||||||| ||||    
T  9633365 atcaccagtaacattaaaaaaatgttgcatttatcatttttgagaagttggaaaa-gtgtcgcaaaattgtctagaataaaaaattgtgaatctaccaaa 9633267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 1654760 - 1654832
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||    
T  1654760 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 1654832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 2550350 - 2550422
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||    
T  2550350 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 2550422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 13846176 - 13846248
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||    
T  13846176 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 13846248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 1627863 - 1627801
Alignment:
Q  63 agtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaatt 125  Q
    ||||||||||||| | ||||||||||||||||||  ||||||||||||| ||||  |||||||    
T  1627863 agtaacaataaaaaagtgttacatttataattttttagaagttgtaaaaagtgtcgcaaaatt 1627801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 7407670 - 7407598
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | ||||||||||||||||||  || |||||||||| ||||  ||||||||| || |||||    
T  7407670 gtaacaataaaaaagtgttacatttataatttttaaggagttgtaaaaagtgtcgcaaaattgtataaactaa 7407598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 2180128 - 2180195
Alignment:
Q  81 ttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaat 148  Q
    ||||||||||||||||   |||||||||||| |||| | |||||||  |||| |||||||||||||||    
T  2180128 ttacatttataattttttggaagttgtaaaaagtgtcagaaaattgcctagattaaaaaattgtgaat 2180195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 25338903 - 25338829
Alignment:
Q  77 aatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatcta 151  Q
    |||||| ||||||| ||||| |||||||||||||| ||||  ||||||| | ||| || ||||||| ||||||||    
T  25338903 aatgttgcatttatcatttttgagaagttgtaaaaagtgtctcaaaattatctaggcttaaaaattatgaatcta 25338829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 17719653 - 17719565
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaa 138  Q
    |||| ||||||  ||||||||||||| | |||||||||||||||||| |||||||||||||| ||||  ||||||||| || |||||||    
T  17719653 tttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaaaattgtctaaactaaaa 17719565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 11936683 - 11936620
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgt 127  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||| |||||||||    
T  11936683 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgttgcaaaattgt 11936620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 11948663 - 11948600
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgt 127  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||| |||||||||    
T  11948663 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgttgcaaaattgt 11948600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 14669276 - 14669189
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaa 137  Q
    |||| ||||||  ||||||||||||| | |||||||||||||||||| ||||||| |||||| ||||  ||||||| | |||||||||    
T  14669276 tttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagtcgtaaaaagtgtcgcaaaattatctagactaaa 14669189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 15361899 - 15361971
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||    
T  15361899 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 15361971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 16734989 - 16735061
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||    
T  16734989 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 16735061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 6684283 - 6684357
Alignment:
Q  63 agtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaa 137  Q
    ||||||||||||| | |||||| ||||||| ||| |||||||||||||| ||||  ||||||||| || ||||||    
T  6684283 agtaacaataaaatagtgttacgtttataaattttgagaagttgtaaaaagtgtcgcaaaattgtctaaactaaa 6684357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 1942752 - 1942840
Alignment:
Q  70 ataaaagaatgttacatttataattttcgagaagttgtaaaatg-tgttacaaaattgtttagactaaaaaattgtgaatctatcaaaa 157  Q
    |||||| ||||||||||| ||||||||  | |||||||||||   |||  ||||||||| ||||| |||||||||||||||||| ||||    
T  1942752 ataaaaaaatgttacattcataattttttaaaagttgtaaaaaaatgtggcaaaattgtatagacaaaaaaattgtgaatctataaaaa 1942840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 10070824 - 10070879
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagtt 105  Q
    |||| ||||||| ||||||||||||| | |||||||||||||||||| || |||||    
T  10070824 tttttgtatcattagtaacaataaaaaagtgttacatttataatttttgaaaagtt 10070879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 12592003 - 12592093
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaa 140  Q
    |||| ||||||  ||| ||||||||| | ||||||  |||||||||| |||||||||||||| ||||  |||| |||| |||| |||||||    
T  12592003 tttttgtatcactagtcacaataaaaaagtgttactattataatttttgagaagttgtaaaaagtgtcgcaaatttgtctagaataaaaaa 12592093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 38449888 - 38449748
Alignment:
Q  71 taaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatctatcaaaac-tcttgctgata 169  Q
    ||||| |||||| ||||||||||||| |||||||||||||| ||||  |||||||||  || |||||| |||||||||||| |||||| | || || ||     
T  38449888 taaaaaaatgtttcatttataatttttgagaagttgtaaaaagtgtcgcaaaattgtccaggctaaaagattgtgaatctaccaaaacatgttactaatt 38449789  T
Q  170 gagatagatta-cagaaagtgaattatttataggagttttt 209  Q
    || ||||||||  | |||||| ||||| |||||||||||||    
T  38449788 gaaatagattagaaaaaagtggattatctataggagttttt 38449748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 23616744 - 23616657
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaa 137  Q
    |||| ||||||  ||||||||||||| | |||||||||||||||||| |||||||||||||| ||||  ||||||||| ||| |||||    
T  23616744 tttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaaaattgtctaggctaaa 23616657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 23848141 - 23848054
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaa 137  Q
    |||| ||||||  ||||||||||||| | |||||||||||||||||| |||||||||||||| ||||  ||||||||| ||| |||||    
T  23848141 tttttgtatcactagtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaaaattgtctaggctaaa 23848054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 5078980 - 5078909
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||    
T  5078980 gtaacaataaaaaagtgttacatttataatttt-gaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 5078909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 10869862 - 10869933
Alignment:
Q  83 acatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatctatcaaaa 157  Q
    |||||||||||||| |||||||||||||| ||||  ||||  |||  |||||||||||||||||||||| |||||    
T  10869862 acatttataatttt-gagaagttgtaaaaagtgtcgcaaagatgt--agactaaaaaattgtgaatctaccaaaa 10869933  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 17037713 - 17037797
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagacta 135  Q
    |||| ||||||  ||||||||||||| | ||||||||||||||||||  ||||||||  ||| ||||  ||||||||| |||||||    
T  17037713 tttttgtatcactagtaacaataaaa-agtgttacatttataatttttaagaagttgacaaaagtgtcgcaaaattgtatagacta 17037797  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 42076249 - 42076317
Alignment:
Q  86 tttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatctatcaaaa 157  Q
    ||||||||||  |||||||||||||| ||||  |||| |||| |||||| |||||||||||||||| |||||    
T  42076249 tttataattt--gagaagttgtaaaaagtgtcgcaaagttgtctagact-aaaaattgtgaatctagcaaaa 42076317  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 20277288 - 20277198
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaa 140  Q
    |||| |||||| || |||| |||||| |||||||||||||||||||| |||||||||||||| ||||   |||||||| || |||||||||    
T  20277288 tttttgtatcaccaataacgataaaaaaatgttacatttataatttttgagaagttgtaaaaagtgtcgtaaaattgtctaaactaaaaaa 20277198  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 3374568 - 3374649
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaa-atgtgttacaaaattgttta 130  Q
    |||| |||||| |||||||||||||| | ||||||||||||||||||  |||||||||||| | ||||| ||||||||||||    
T  3374568 tttttgtatcaccagtaacaataaaaaagtgttacatttataattttttagaagttgtaaagaagtgttgcaaaattgttta 3374649  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 19746806 - 19746869
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgt 127  Q
    |||||||||||| | |||||||||||||||||| |||||||||||||| ||||  |||||||||    
T  19746806 gtaacaataaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaaaattgt 19746869  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 4685319 - 4685247
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||    
T  4685319 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 4685247  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 9242399 - 9242327
Alignment:
Q  65 taacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaa 137  Q
    ||||||| ||| | |||||||||||||||||| |||||||||||||| ||||  ||||||||| |||| ||||    
T  9242399 taacaatgaaaaagtgttacatttataatttttgagaagttgtaaaaagtgtcgcaaaattgtctagattaaa 9242327  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 10022286 - 10022365
Alignment:
Q  55 gtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagacta 135  Q
    |||||| | |||||||||||| |  || |||||||||||||| |||||| ||| ||| ||||  |||||||||||||||||    
T  10022286 gtatcaccggtaacaataaaaaagagtaacatttataatttttgagaag-tgtcaaaagtgtcgcaaaattgtttagacta 10022365  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 51758923 - 51759008
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaa 137  Q
    |||| |||||| |||||||||||||| | |||||||||||| ||||| |||||||||| ||  |||| |||||||||| |||||||||    
T  51758923 tttttgtatcaccagtaacaataaaaaagtgttacatttatgatttttgagaagttgtgaa--gtgtcacaaaattgtctagactaaa 51759008  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 18308346 - 18308426
Alignment:
Q  77 aatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatctatcaaaa 157  Q
    |||||||||||||||||||| |||||||| ||||| ||||| |||| ||||   | |||||| |||||||||||| |||||    
T  18308346 aatgttacatttataatttttgagaagttataaaaagtgttgcaaagttgtcgtggctaaaatattgtgaatctaccaaaa 18308426  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 39368030 - 39367962
Alignment:
Q  90 taattttcgagaagttgtaaaat-gtgttacaaaattgtttagactaaaaaattgtgaatctatcaaaa 157  Q
    ||||||| ||||||||||||||  ||||  |||||||||  ||||||||||||||||||||||||||||    
T  39368030 taatttttgagaagttgtaaaaaagtgtcgcaaaattgtccagactaaaaaattgtgaatctatcaaaa 39367962  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 47694789 - 47694716
Alignment:
Q  83 acatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatctatcaaaa 157  Q
    |||||||||||||| |||||||||||||| || |  |||| |||| |||||||||||||||||| |||| |||||    
T  47694789 acatttataatttt-gagaagttgtaaaaagtatcgcaaagttgtctagactaaaaaattgtgagtctaccaaaa 47694716  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 17113133 - 17113205
Alignment:
Q  85 atttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaattgtgaatctatcaaaa 157  Q
    |||||||||||  || ||||||||||| ||||  |||| |||| |||||||||||| |||||||||| |||||    
T  17113133 atttataatttgtgaaaagttgtaaaaagtgtcgcaaagttgtctagactaaaaaaatgtgaatctagcaaaa 17113205  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 28637576 - 28637637
Alignment:
Q  79 tgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaaaaa 140  Q
    ||||||||| |||||||| ||| |||||||||| ||||  ||||||| | ||||||||||||    
T  28637576 tgttacattcataatttttgagtagttgtaaaaagtgtcgcaaaattatctagactaaaaaa 28637637  T

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Target: scaffold0576 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 6883 - 6955
Alignment:
Q  64 gtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaa 136  Q
    |||||||||||| | |||||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||    
T  6883 gtaacaataaaaaagtgttacatttataatttttgaggagttgtaaaaagtgtcgcaaaattgtctaaactaa 6955  T

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Target: scaffold0684 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 677 - 590
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaa 137  Q
    |||| ||||||  ||||||||| ||| | |||||||||||||||||| ||| |||||||||| ||||  ||||||||| |||| ||||    
T  677 tttttgtatcactagtaacaatgaaaaagtgttacatttataatttttgagtagttgtaaaaagtgtcgcaaaattgtctagattaaa 590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 40628 - 40541
Alignment:
Q  50 ttttagtatcatcagtaacaataaaagaatgttacatttataattttcgagaagttgtaaaatgtgttacaaaattgtttagactaaa 137  Q
    |||| ||||||  ||||||||| ||| | | |||||||||||||||| |||||||||||||| ||||  ||||||||| |||| ||||    
T  40628 tttttgtatcactagtaacaatgaaaaagttttacatttataatttttgagaagttgtaaaaagtgtcccaaaattgtctagattaaa 40541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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