View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_2D_low_3 (Length: 585)
Name: NF0493_2D_low_3
Description: NF0493_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_2D_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 80 - 411
Target Start/End: Complemental strand, 1337845 - 1337511
Alignment:
| Q |
80 |
ttataatttctatttttcctttcccttcttttattgatggtgcagattatgca---atagtgggtaagattcgtttt-attttaatgcctcacttgcatt |
175 |
Q |
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| T |
1337845 |
ttataatttctatttttcctttcccttcttttattgatggtgcagattatgcagcaatagtgggtaagattcgttttgattttaatgcctcacttgcatt |
1337746 |
T |
|
| Q |
176 |
ctttttgattctatacagtatacattattaccggtgcccggtggtaattagttaaaagcaaagtgtgacattgttttgctagattatcaagagtaactct |
275 |
Q |
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| T |
1337745 |
ctttttgattctatacagtatacattattaccggtgcccggtggtaattagttaaaagcaaagtgtaacattgttttgctagattatcaagagtaactct |
1337646 |
T |
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| Q |
276 |
tgcttgaaacaagattttagacataagatttggaaacactcattaaaaaaggctcacttgtcaaaatgaaaataggtagnnnnnnnnttaagatatgtat |
375 |
Q |
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| T |
1337645 |
tgcttgaaacaagattttagacataagatttggaaacactcattaaaaaa-gctcacttgtcaaaatgaaaataggtagaaaaaaaattaagatatgtat |
1337547 |
T |
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| Q |
376 |
ttaattttgtgtccaaatcttgtgatcactcatgtg |
411 |
Q |
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| T |
1337546 |
ttaattttgtgttcaaatcttgtgatcactcatgtg |
1337511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 445 - 585
Target Start/End: Complemental strand, 1337512 - 1337372
Alignment:
| Q |
445 |
tgctctattgacaataaattacatagtttacaataggtatacattttttgaaatgtacgtaaggtaaatacataaaaaattattttaataagaagggatt |
544 |
Q |
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| T |
1337512 |
tgctttattgacaataaattacatagtttacaataggtataaaatttatgaaatgtacgtaaggtaaatacataaaaaattattttaataaggagggatt |
1337413 |
T |
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| Q |
545 |
atttttgtaagcatgataaaatatgagacaagaatgcaatt |
585 |
Q |
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| T |
1337412 |
atttttgtaagcatgataaaatatgagacaagaatgcaatt |
1337372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 83
Target Start/End: Complemental strand, 1343719 - 1343689
Alignment:
| Q |
53 |
agaagcacaagaagaaacatgctatgcttat |
83 |
Q |
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| T |
1343719 |
agaagcacaagaagaaacatgctatgcttat |
1343689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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