View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_2D_low_6 (Length: 427)

Name: NF0493_2D_low_6
Description: NF0493_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_2D_low_6
NF0493_2D_low_6
[»] chr3 (1 HSPs)
chr3 (139-409)||(45980603-45980873)
[»] chr7 (1 HSPs)
chr7 (41-109)||(47861042-47861110)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 139 - 409
Target Start/End: Original strand, 45980603 - 45980873
Alignment:
Q  139 atggttctataagcattgttttgtttacttggcagtgaccctgctcagcgcccatcttttggaggcataattgagtcactaaggaagctcctgaagtctc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45980603 atggttctataagcattgttttgtttacttggcagtgaccctgctcagcgcccatcttttggaggcataattgagtcactaaggaagctcctgaagtctc 45980702  T
Q  239 caacagagatgataaaaatgggtgatactcacaacccataattggttttcttgttgctgaaatttgttgaactaataaggaaacattggtagtcgtatat 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45980703 caacagagatgataaaaatgggtgatactcacaacccataattggttttcttgttgctgaaatttgttgaactaataaggaaacattggtagtcgtatat 45980802  T
Q  339 catctgaatgacagaaccttggctgtttgcaactgtatattgtaatttaaaggctcaaataggtgctgtct 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45980803 catctgaatgacagaaccttggctgtttgcaactgtatattgtaatttaaaggctcaaataggtgctgtct 45980873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 47861110 - 47861042
Alignment:
Q  41 gttgcataaattaatgtagggcagaggaaagtcacacactgtttttaaaataaaaataattaacaggca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47861110 gttgcataaattaatgtagggcagaggaaagtcacacactgtttttaaaataaaaataattaacaggca 47861042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University