View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_2D_low_7 (Length: 427)
Name: NF0493_2D_low_7
Description: NF0493_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_2D_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 7330043 - 7329635
Alignment:
| Q |
1 |
ctacaattcaaaatgaacccatttaaacaatatatcaatgnnnnnnnnnnnnnctagaacataaacacaaagtaaatgatgtgaagtgtttcattattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7330043 |
ctacaattcaaaatgaacccatttaaacaatatatcgatgaaaaacgaaaaaactagaacataaacacaaagtaaatgatgtgaagtgtttcatcattct |
7329944 |
T |
|
| Q |
101 |
caagtttatagcatcttataacatgccaacaagttgcaaactgtagtgcttggaactatcagatatgtactgcagtggtaatttcataatagagttttcc |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7329943 |
caagtttatagcatcttataatatgccaacaagttgcaaactgtagtgcttggaactatcagatatgtactgcagtggtaatttcctaatagagttttcc |
7329844 |
T |
|
| Q |
201 |
tcattctcaagtttccaaagctcatttcattcatttcagattcattagttacatgaccttaaatcagaactggatgcatcagactttgtgatcagattta |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7329843 |
tcattctcaagtttccaaagttcatttcattcatttcagattcattagttacatgaccttaaatcagaactggatgcatcagactttgtgatcagattta |
7329744 |
T |
|
| Q |
301 |
tagaatattgttgtgttgcatcgctattgtcgctactaaagcaaaccttttctagagaagtgtcaatacatcctaaacaaacagattctaactcataaga |
400 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7329743 |
tagaatattgttgtgttgcattgctattgtcgctactaaagcaaaccttttctagagaagtgtcaatacatcctaaacaaacagattctaactcataaga |
7329644 |
T |
|
| Q |
401 |
taaaatcat |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
7329643 |
taaaatcat |
7329635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 180 - 401
Target Start/End: Original strand, 7310115 - 7310334
Alignment:
| Q |
180 |
aatttcataatagagttttcctcattctcaagtttccaaagctcatttcattcattt-cagattcattagttacatgaccttaaatcagaactggatgca |
278 |
Q |
| |
|
||||| |||||| |||||||| | ||||||||||||| ||| || | | |||||||| ||||| ||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
7310115 |
aatttgataataaagttttcccctttctcaagtttccgaagttcttctaattcattttcagatgcatcagtaacatgaccctaaatcagaactggatgca |
7310214 |
T |
|
| Q |
279 |
tcagactttgtgatcagatttatagaatattgttgtgttgcatcgctattgtcgctactaaagcaaaccttttctagagaagtgtcaatacatcctaaac |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
7310215 |
tcagactttgtgatcagatttatagaatattgttg---tgcatcgctattgtcgcaactaaagcaaaacttttcgagataagtgtcaatacatcctaaac |
7310311 |
T |
|
| Q |
379 |
aaacagattctaactcataagat |
401 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
7310312 |
aaacagattctaactcagaagat |
7310334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 7300846 - 7300924
Alignment:
| Q |
234 |
tttcagattcattagttacatgaccttaaatcagaactggatgcatcagactttgtgatcagatttatagaatattgttgt |
314 |
Q |
| |
|
|||| ||| ||||||| |||||||| ||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||| |
|
|
| T |
7300846 |
tttcggatgcattagtaacatgaccctaaatcagaactggatgcatcagac--tgcgatcaaatttacagaatgttgttgt |
7300924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 7309996 - 7310079
Alignment:
| Q |
71 |
agtaaatgatgtgaagtgtttcattattctcaagtttatagcatcttataacatgccaacaagttgcaaactgtagtgcttggaactatcagat |
164 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||| | |||||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
7309996 |
agtaaatcatgtgaagtgtttcattattctcaagattatag----------cctgccaacaagttacaaaatgtagtgcttggaacaatcagat |
7310079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 22482274 - 22482321
Alignment:
| Q |
183 |
ttcataatagagttttcctcattctcaagtttccaaagctcatttcat |
230 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
22482274 |
ttcataatagagttttcccgattcttaactttccaaagctcatttcat |
22482321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 198 times since January 2019
Visitors: 3465