View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_2D_low_8 (Length: 396)

Name: NF0493_2D_low_8
Description: NF0493_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_2D_low_8
NF0493_2D_low_8
[»] chr1 (14 HSPs)
chr1 (200-385)||(19223447-19223632)
chr1 (20-145)||(19223312-19223436)
chr1 (174-310)||(9985137-9985273)
chr1 (172-306)||(24005887-24006030)
chr1 (173-233)||(12398141-12398202)
chr1 (173-233)||(19018772-19018833)
chr1 (173-227)||(17496313-17496368)
chr1 (172-206)||(15650746-15650780)
chr1 (172-206)||(15787420-15787454)
chr1 (173-206)||(10751560-10751593)
chr1 (173-206)||(31584028-31584061)
chr1 (173-206)||(34188205-34188238)
chr1 (173-205)||(19337179-19337211)
chr1 (174-206)||(30498310-30498342)
[»] chr7 (17 HSPs)
chr7 (172-355)||(19842130-19842315)
chr7 (172-362)||(20053489-20053680)
chr7 (174-330)||(17915876-17916030)
chr7 (172-330)||(8807704-8807861)
chr7 (172-316)||(232252-232403)
chr7 (174-362)||(10983391-10983578)
chr7 (180-293)||(4876646-4876759)
chr7 (174-231)||(9261029-9261086)
chr7 (178-355)||(17918982-17919167)
chr7 (174-231)||(19142398-19142455)
chr7 (174-231)||(20741797-20741854)
chr7 (261-352)||(2641429-2641521)
chr7 (174-231)||(9245006-9245063)
chr7 (180-233)||(10646486-10646540)
chr7 (173-206)||(1783407-1783440)
chr7 (175-230)||(7185280-7185336)
chr7 (173-205)||(7560724-7560756)
[»] chr8 (19 HSPs)
chr8 (172-355)||(5826570-5826754)
chr8 (172-355)||(5829175-5829359)
chr8 (172-365)||(18566065-18566259)
chr8 (174-330)||(241056-241212)
chr8 (174-330)||(794411-794567)
chr8 (178-330)||(211048-211200)
chr8 (178-330)||(724671-724823)
chr8 (172-233)||(23432578-23432639)
chr8 (174-233)||(13645687-13645746)
chr8 (174-233)||(13746112-13746171)
chr8 (172-233)||(27118291-27118353)
chr8 (250-315)||(13645596-13645661)
chr8 (250-315)||(13746021-13746086)
chr8 (172-235)||(13303524-13303588)
chr8 (173-233)||(7321032-7321093)
chr8 (174-233)||(28857026-28857084)
chr8 (173-206)||(12863812-12863845)
chr8 (173-206)||(24276857-24276890)
chr8 (261-313)||(23432674-23432726)
[»] chr2 (16 HSPs)
chr2 (174-362)||(25348341-25348530)
chr2 (172-329)||(16197122-16197278)
chr2 (172-328)||(24216284-24216439)
chr2 (172-233)||(26654343-26654404)
chr2 (175-234)||(26652803-26652862)
chr2 (172-329)||(8685956-8686120)
chr2 (172-233)||(22311217-22311279)
chr2 (174-235)||(24764139-24764201)
chr2 (172-217)||(16151879-16151924)
chr2 (173-231)||(17417096-17417155)
chr2 (172-205)||(16973524-16973557)
chr2 (173-233)||(25916214-25916275)
chr2 (172-231)||(21547905-21547965)
chr2 (173-230)||(18848739-18848797)
chr2 (173-206)||(11871902-11871935)
chr2 (173-206)||(42256604-42256637)
[»] chr6 (17 HSPs)
chr6 (172-330)||(14201589-14201747)
chr6 (172-330)||(21686684-21686842)
chr6 (172-330)||(19731812-19731970)
chr6 (172-325)||(27124606-27124761)
chr6 (172-309)||(1636959-1637096)
chr6 (174-233)||(19134107-19134166)
chr6 (172-230)||(7775130-7775188)
chr6 (173-233)||(239490-239550)
chr6 (174-233)||(10482461-10482520)
chr6 (173-231)||(28952274-28952332)
chr6 (172-230)||(225831-225889)
chr6 (172-233)||(18614938-18615000)
chr6 (172-233)||(10821477-10821539)
chr6 (250-355)||(19133976-19134082)
chr6 (173-206)||(26239019-26239052)
chr6 (173-206)||(24576181-24576214)
chr6 (173-206)||(29032408-29032441)
[»] chr3 (21 HSPs)
chr3 (174-330)||(21318663-21318820)
chr3 (172-316)||(13340421-13340565)
chr3 (173-362)||(44755233-44755423)
chr3 (172-330)||(13177521-13177679)
chr3 (172-355)||(9323836-9324028)
chr3 (174-233)||(11360485-11360544)
chr3 (180-234)||(15330957-15331011)
chr3 (173-233)||(20311361-20311422)
chr3 (174-233)||(14426905-14426965)
chr3 (172-233)||(16198665-16198727)
chr3 (174-233)||(38076025-38076085)
chr3 (174-233)||(46349403-46349463)
chr3 (172-233)||(4767354-4767416)
chr3 (174-204)||(11045031-11045061)
chr3 (173-207)||(14322942-14322976)
chr3 (173-233)||(9796548-9796609)
chr3 (173-202)||(14328715-14328744)
chr3 (173-206)||(17034139-17034172)
chr3 (173-206)||(23953632-23953665)
chr3 (173-205)||(4253304-4253336)
chr3 (173-205)||(5638327-5638359)
[»] chr5 (11 HSPs)
chr5 (172-330)||(25570042-25570200)
chr5 (174-330)||(28760744-28760904)
chr5 (174-362)||(24884889-24885078)
chr5 (172-233)||(9824664-9824725)
chr5 (187-330)||(24163991-24164133)
chr5 (172-265)||(16790917-16791012)
chr5 (172-231)||(24492085-24492145)
chr5 (174-233)||(21215335-21215394)
chr5 (199-329)||(21216101-21216238)
chr5 (248-330)||(21215417-21215499)
chr5 (173-226)||(26335230-26335284)
[»] scaffold0002 (1 HSPs)
scaffold0002 (172-330)||(129309-129467)
[»] scaffold0520 (1 HSPs)
scaffold0520 (174-329)||(7629-7783)
[»] chr4 (11 HSPs)
chr4 (174-355)||(22316363-22316552)
chr4 (173-330)||(5842473-5842630)
chr4 (172-330)||(16321852-16322018)
chr4 (174-233)||(8912060-8912119)
chr4 (172-229)||(12333744-12333801)
chr4 (172-231)||(22222342-22222402)
chr4 (250-355)||(8911928-8912034)
chr4 (173-206)||(20245768-20245801)
chr4 (173-235)||(8677230-8677293)
chr4 (173-233)||(11449108-11449169)
chr4 (174-230)||(47576018-47576075)
[»] scaffold0300 (2 HSPs)
scaffold0300 (172-312)||(7669-7809)
scaffold0300 (173-309)||(12391-12527)
[»] scaffold0032 (1 HSPs)
scaffold0032 (174-307)||(79552-79685)
[»] scaffold0041 (2 HSPs)
scaffold0041 (172-233)||(26880-26941)
scaffold0041 (256-330)||(26774-26848)
[»] scaffold0068 (1 HSPs)
scaffold0068 (175-330)||(56791-56944)
[»] scaffold0653 (1 HSPs)
scaffold0653 (174-231)||(4699-4756)
[»] scaffold0711 (1 HSPs)
scaffold0711 (186-233)||(1309-1356)
[»] scaffold0256 (1 HSPs)
scaffold0256 (172-206)||(12811-12845)
[»] scaffold0062 (1 HSPs)
scaffold0062 (261-327)||(2896-2962)
[»] scaffold0053 (1 HSPs)
scaffold0053 (172-233)||(28300-28362)
[»] scaffold0402 (1 HSPs)
scaffold0402 (173-205)||(236-268)
[»] scaffold0003 (1 HSPs)
scaffold0003 (173-205)||(319068-319100)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 200 - 385
Target Start/End: Original strand, 19223447 - 19223632
Alignment:
Q  200 acaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatcagaaggagattgagaagcttagaaga 299  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19223447 acaattataatactaacatatgtttaagtgtgcaagttctacctatcataaagaagaaacgtatgaagagcatcagaaggagattgagaagcttagaaga 19223546  T
Q  300 ctatggtggaagatctactggaaggtcaaccgttgtcaacgtccttagtagaaggaactctcataggagttgggaagtgatgtcca 385  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||    
T  19223547 ctatggtggaagatctactggaaggtcaaccggtgtcaacgtccttagtagaaggaagtctcataggagttggggagtgatctcca 19223632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 19223312 - 19223436
Alignment:
Q  20 attaaaatgttagtacataggattatacttaaatataagcatattggttgtaaatgcatgtaccatgagataggggggtcgaattgtattctcatgcatt 119  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||    
T  19223312 attaaaatgttagtacataggattatacttaaatataagcatgttggttgtaaatgcatataccatgtgatagggaggtcg-attgtattctcatgcatt 19223410  T
Q  120 atcaaagttgcatgtgttagaataag 145  Q
    |||| |||| ||||||||||||||||    
T  19223411 atcacagttacatgtgttagaataag 19223436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 174 - 310
Target Start/End: Complemental strand, 9985273 - 9985137
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatc 273  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |  || | |||||| |||||||||| |||||||| |||     
T  9985273 ttttgatgataacaaattattgaagaacaattgaaatactaacatatgttcaagtgtgcaggaactccttatcatgaagaaggaacatatgaagaacatt 9985174  T
Q  274 agaaggagattgagaagcttagaagactatggtggaa 310  Q
      ||  | |||| |||||||||||| |||| ||||||    
T  9985173 gaaaataaattgggaagcttagaaggctatagtggaa 9985137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 306
Target Start/End: Original strand, 24005887 - 24006030
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttc--------tacctatca-taaagaaggaacgta 262  Q
    ||||||||||||||||| ||| |||||| |  ||  |||||||||||||||||||||||||||  ||         | |||||| ||||||| |||| ||    
T  24005887 ggttttgatgataacaacgtactgaagatcttttagaatactaacatatgttcaagtgtgcaaaatcaaagaatgaatctatcattaaagaatgaacata 24005986  T
Q  263 tgaagagcatcagaaggagattgagaagcttagaagactatggt 306  Q
    ||||||||||||||||||    ||||||||||||||||||||||    
T  24005987 tgaagagcatcagaaggaccaagagaagcttagaagactatggt 24006030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 12398202 - 12398141
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    ||||||||||||| |||||||||||||| ||||| | || |||| |||||||||||||||||    
T  12398202 gttttgatgataataaagtattgaagaataattgaatatgctaatatatgttcaagtgtgca 12398141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 19018772 - 19018833
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    ||||||||||||| ||||||||||||| |||||| | ||||||| || ||||||||||||||    
T  19018772 gttttgatgataataaagtattgaagagcaattgaatatactaatatttgttcaagtgtgca 19018833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 17496313 - 17496368
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaag 227  Q
    |||||||| ||||||||||||||||||||||||| | ||||||| || ||||||||    
T  17496313 gttttgataataacaaagtattgaagaacaattggatatactaatatttgttcaag 17496368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 15650746 - 15650780
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattg 206  Q
    |||||||||||||| ||||||||||||||||||||    
T  15650746 ggttttgatgataataaagtattgaagaacaattg 15650780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 15787420 - 15787454
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattg 206  Q
    ||||||||||||||||||||||||| |||||||||    
T  15787420 ggttttgatgataacaaagtattgacgaacaattg 15787454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 10751593 - 10751560
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    |||||||||||||||||||||| |||||||||||    
T  10751593 gttttgatgataacaaagtattaaagaacaattg 10751560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 31584028 - 31584061
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    |||||||||||||||||||||||||||| |||||    
T  31584028 gttttgatgataacaaagtattgaagaataattg 31584061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 34188238 - 34188205
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    ||||||||||||||||||||||||| ||||||||    
T  34188238 gttttgatgataacaaagtattgaaaaacaattg 34188205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 19337211 - 19337179
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaatt 205  Q
    ||||||||||||||||| |||||||||||||||    
T  19337211 gttttgatgataacaaaatattgaagaacaatt 19337179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 30498342 - 30498310
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattg 206  Q
    |||||||||||||||||||||||| ||||||||    
T  30498342 ttttgatgataacaaagtattgaacaacaattg 30498310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 172 - 355
Target Start/End: Original strand, 19842130 - 19842315
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||| ||||| |||| |||||||||||    
T  19842130 ggttttgatgataacaaagtattgaagaacaattgcaatactaacatatgttcaagtgtgcaggatctacttatcatgaagaaagaacatatgaagagca 19842229  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaa-ggtcaaccgt-tgtcaacgtccttagtagaagga 355  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||||||||| |||||||| |  |||||||||||||| |||||||    
T  19842230 tcagaaggggattgagaagattagaagactatggtggaaaatctactggaagggtcaaccataagtcaacgtccttagaagaagga 19842315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 172 - 362
Target Start/End: Complemental strand, 20053680 - 20053489
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| || | | |||||||||| |||||| ||||    
T  20053680 ggttttgatgataacaaagtattgaagaacaattggaatactaacatatgttcaagtgtgcaggatctacttaccttgaagaaggaacatatgaatagca 20053581  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc-gttgtcaacgtccttagtagaaggaactctca 362  Q
    ||| || | |||||||||||||| |||||||||||||||||||||||||||| |||||| |  ||  |||||||||| |||||||| |||||    
T  20053580 tcataaagggattgagaagcttataagactatggtggaagatctactggaagttcaaccagaagtacacgtccttagaagaaggaagtctca 20053489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 17916030 - 17915876
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatc 273  Q
    |||||||||||| |||||||||||||||||| | ||||||||||||| || ||||||||| | ||||| |||||| || ||||||| ||| |||||||||    
T  17916030 ttttgatgataataaagtattgaagaacaataggaatactaacatatatttaagtgtgcatgatctacttatcattaataaggaacatataaagagcatc 17915931  T
Q  274 agaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
     ||| ||||||| |||||||| |||||| |||||| |||  ||||||||||||||||    
T  17915930 tgaaagagattgggaagcttaaaagactttggtggtaga--tactggaaggtcaacc 17915876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 172 - 330
Target Start/End: Complemental strand, 8807861 - 8807704
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    ||||||||||  || ||||||||||||||| |||  ||||||| |||||||||||||||||| | | || ||||||| ||||| | || |||||||||||    
T  8807861 ggttttgatgtaaaaaaagtattgaagaacgattagaatacta-catatgttcaagtgtgcatgatttatctatcatgaagaaaggacatatgaagagca 8807763  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    ||||||   ||||| |||||| |||||||||||||||||||||||| ||||||||||||    
T  8807762 tcagaaaatgattgggaagctaagaagactatggtggaagatctacaggaaggtcaacc 8807704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 172 - 316
Target Start/End: Original strand, 232252 - 232403
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttc-------tacctatcataaagaaggaacgtatg 264  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||  |||       || ||||||| ||||| |||| ||||    
T  232252 ggttttgatgataacaaaatattgaagaacaattggaatactaacatatgttcaagtgtgcagattcaagaatatatctatcatgaagaaagaacatatg 232351  T
Q  265 aagagcatcagaaggagattgagaagcttagaagactatggtggaagatcta 316  Q
    |||||||| |||| ||  | |||||||||| ||||||||||||||| |||||    
T  232352 aagagcattagaaagaactagagaagcttaaaagactatggtggaatatcta 232403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 174 - 362
Target Start/End: Original strand, 10983391 - 10983578
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatc 273  Q
    ||||||||||||||||||||||||||||||||   ||| |||||||||||| |||||||| | | ||| |||||| || || | |  |||||||||||||    
T  10983391 ttttgatgataacaaagtattgaagaacaattagtataataacatatgttctagtgtgcaggatttacttatcatgaaaaaag-atatatgaagagcatc 10983489  T
Q  274 agaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaaccgttgtcaacgtccttagtagaaggaactctca 362  Q
    | || | ||||| ||| | |||||||||||| ||||||||||| |||||||| ||     |||||||||||||||||||| || |||||    
T  10983490 aaaaagggattgggaaacgtagaagactatgatggaagatctattggaaggttaatataagtcaacgtccttagtagaagaaagtctca 10983578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 180 - 293
Target Start/End: Complemental strand, 4876759 - 4876646
Alignment:
Q  180 tgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatcagaagg 279  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||   | ||| | |||| ||| | | || ||||||||||||||||| |    
T  4876759 tgataacaaagtattgaagaacaattggaatactaacatatgttcaagtgtgcagaatttacttgtcatgaagcaaggacatatgaagagcatcagaaag 4876660  T
Q  280 agattgagaagctt 293  Q
     ||||| |||||||    
T  4876659 ggattgggaagctt 4876646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 9261029 - 9261086
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtg 231  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  9261029 ttttgatgataacaaagtattgaagaataattggaatactaacatatgttcaagtgtg 9261086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 178 - 355
Target Start/End: Complemental strand, 17919167 - 17918982
Alignment:
Q  178 gatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctac--------ctatcataaagaaggaacgtatgaagag 269  Q
    |||||||| ||| |||||||||||||||  |||| ||||||||||||||||||||| | ||||         ||||||||| ||| |||| |||||||||    
T  17919167 gatgataaaaaaatattgaagaacaattagaatattaacatatgttcaagtgtgca-gatctaaggataagtctatcataatgaatgaacatatgaagag 17919069  T
Q  270 catcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc-gttgtcaacgtccttagtagaagga 355  Q
    | |||||||||   ||||||| |||||||||||| || |||||||||  ||||||||||||    |||||||||||||| |||||||    
T  17919068 cgtcagaaggaacatgagaagtttagaagactatagtagaagatctaaaggaaggtcaaccaaaagtcaacgtccttagaagaagga 17918982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 19142398 - 19142455
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtg 231  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  19142398 ttttgatgataacaaagtattaaagaacaattgaaatactaacatatgttcaaatgtg 19142455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 20741797 - 20741854
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtg 231  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  20741797 ttttgatgataacaaagtattaaagaacaattgaaatactaacatatgttcaaatgtg 20741854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 352
Target Start/End: Original strand, 2641429 - 2641521
Alignment:
Q  261 tatgaagagcatcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc-gttgtcaacgtccttagtagaa 352  Q
    ||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||| |  |||||||| ||| |  |||||||||||||| ||||    
T  2641429 tatgaggagcatcagaaagagattgggaagcttagaagactatgatggaagatccaaaggaaggtctaccagaagtcaacgtccttagaagaa 2641521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 9245006 - 9245063
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtg 231  Q
    |||||||||||||||| |||||||||| ||||| |||| || ||||||||||||||||    
T  9245006 ttttgatgataacaaactattgaagaataattggaatattagcatatgttcaagtgtg 9245063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 10646486 - 10646540
Alignment:
Q  180 tgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    |||||||||||||||||| |||||||| | ||  |||||||||||||||||||||    
T  10646486 tgataacaaagtattgaataacaattggatatgttaacatatgttcaagtgtgca 10646540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 1783440 - 1783407
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  1783440 gttttgatgataacaaagttttgaagaacaattg 1783407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 7185280 - 7185336
Alignment:
Q  175 tttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgt 230  Q
    |||||||||||||||||||||||| ||||||| | || |||| || |||||||||||    
T  7185280 tttgatgataacaaagtattgaaggacaattggatatgctaatatttgttcaagtgt 7185336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 7560724 - 7560756
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaatt 205  Q
    |||||||||||||||||||||| ||||||||||    
T  7560724 gttttgatgataacaaagtattaaagaacaatt 7560756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 172 - 355
Target Start/End: Complemental strand, 5826754 - 5826570
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    |||||||||||||||||||||||| |||||||||| |||| |||||||||| |||||||||| | ||||| |||||| ||||| |||| |||||||||||    
T  5826754 ggttttgatgataacaaagtattgcagaacaattggaatattaacatatgtccaagtgtgcatgatctacttatcatgaagaaagaacatatgaagagca 5826655  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaaccgt-tgtcaacgtccttagtagaagga 355  Q
    || ||| | ||||| |||||||||||||||||||| |||||||||| |||||||||||| |  |||||||||||||| |||||||    
T  5826654 tctgaaagggattgggaagcttagaagactatggttgaagatctacaggaaggtcaaccataagtcaacgtccttagaagaagga 5826570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 172 - 355
Target Start/End: Complemental strand, 5829359 - 5829175
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    |||||||||||||||||||||||| |||||||||| ||||  ||||||||| |||||||||| | ||||| |||||| ||||| |||| |||||||||||    
T  5829359 ggttttgatgataacaaagtattgcagaacaattggaatataaacatatgtccaagtgtgcatgatctacttatcatgaagaaagaacatatgaagagca 5829260  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaaccgt-tgtcaacgtccttagtagaagga 355  Q
    || ||| | ||||| |||||||||||||||||||| |||||||||| |||||||||||| |  |||||||||||||| |||||||    
T  5829259 tctgaaagggattgggaagcttagaagactatggttgaagatctacaggaaggtcaaccataagtcaacgtccttagaagaagga 5829175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 172 - 365
Target Start/End: Complemental strand, 18566259 - 18566065
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||| || |||| ||||| || | || ||||||      
T  18566259 ggttttgatgataacaaagtattgaagaacaattggaatactaacatatgttcaagtgtgcagaatctatctgtcatgaagaaagagcatacgaagagtg 18566160  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc-gttgtcaacgtccttagtagaaggaactctcatag 365  Q
    ||||||||| || ||||||||||||||||||||||||||||||||  ||||||| |||| |  |||||||||||||| |||||||  ||||||||    
T  18566159 tcagaaggaaatggagaagcttagaagactatggtggaagatctaaaggaaggttaaccagaagtcaacgtccttagaagaaggatgtctcatag 18566065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 241212 - 241056
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatc 273  Q
    |||||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||| |  || | |||||| |||||| ||| |||||||||||||    
T  241212 ttttgatgataacaaactgttgaagaacaattggaatactaacatatgttcaagtgagcaggaactccttatcatgaagaagaaacatatgaagagcatc 241113  T
Q  274 agaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    |||| ||||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  241112 agaaagagattgggaagcttgaaagactatggtggaagatctactggaaggtcaacc 241056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 794567 - 794411
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatc 273  Q
    |||||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||| |  || | |||||| |||||| ||| |||||||||||||    
T  794567 ttttgatgataacaaactgttgaagaacaattggaatactaacatatgttcaagtgagcaggaactccttatcatgaagaagaaacatatgaagagcatc 794468  T
Q  274 agaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    |||| ||||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  794467 agaaagagattgggaagcttgaaagactatggtggaagatctactggaaggtcaacc 794411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 178 - 330
Target Start/End: Original strand, 211048 - 211200
Alignment:
Q  178 gatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatcagaa 277  Q
    |||||||||||| | |||||||||||||| |||||||||||||||||||||| ||| |  || | |||||| |||||| ||| |||||||||||||||||    
T  211048 gatgataacaaactgttgaagaacaattggaatactaacatatgttcaagtgagcaggaactccttatcatgaagaagaaacatatgaagagcatcagaa 211147  T
Q  278 ggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
     ||||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  211148 agagattgggaagcttgaaagactatggtggaagatctactggaaggtcaacc 211200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 178 - 330
Target Start/End: Original strand, 724671 - 724823
Alignment:
Q  178 gatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatcagaa 277  Q
    |||||||||||| | |||||||||||||| |||||||||||||||||||||| ||| |  || | |||||| |||||| ||| |||||||||||||||||    
T  724671 gatgataacaaactgttgaagaacaattggaatactaacatatgttcaagtgagcaggaactccttatcatgaagaagaaacatatgaagagcatcagaa 724770  T
Q  278 ggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
     ||||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  724771 agagattgggaagcttgaaagactatggtggaagatctactggaaggtcaacc 724823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 23432578 - 23432639
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  23432578 ggttttgatgataataaagtatcgaagaacaattggaatactaacatatgttcaagtgtgca 23432639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 13645746 - 13645687
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  13645746 ttttgatgataacaaagtattgaataacaattggtatactaacatatgttcaagtgtgca 13645687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 13746171 - 13746112
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  13746171 ttttgatgataacaaagtattgaataacaattggtatactaacatatgttcaagtgtgca 13746112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 27118291 - 27118353
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    |||||||||||||| |||||||||||||||||||| | ||| |||||| ||||||||||||||    
T  27118291 ggttttgatgataagaaagtattgaagaacaattgaatatagtaacatttgttcaagtgtgca 27118353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 13645661 - 13645596
Alignment:
Q  250 aagaaggaacgtatgaagagcatcagaaggagattgagaagcttagaagactatggtggaagatct 315  Q
    ||||| ||||| ||||||||||||| ||||| || ||||||  |||||||||||||||||||||||    
T  13645661 aagaatgaacgaatgaagagcatcataaggacatagagaagtctagaagactatggtggaagatct 13645596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 13746086 - 13746021
Alignment:
Q  250 aagaaggaacgtatgaagagcatcagaaggagattgagaagcttagaagactatggtggaagatct 315  Q
    ||||| ||||| ||||||||||||| ||||| || ||||||  |||||||||||||||||||||||    
T  13746086 aagaatgaacgaatgaagagcatcataaggacatagagaagtctagaagactatggtggaagatct 13746021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 13303588 - 13303524
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgcaag 235  Q
    |||||||||||||||||| ||||||| |||||||| | ||||||| || ||||||||||||||||    
T  13303588 ggttttgatgataacaaaatattgaaaaacaattggatatactaatatttgttcaagtgtgcaag 13303524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 7321032 - 7321093
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    ||||||||||||||||||||||||||||| ||| || || |||| ||||||| |||||||||    
T  7321032 gttttgatgataacaaagtattgaagaactattttatatgctaatatatgtttaagtgtgca 7321093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 28857026 - 28857084
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    |||||||||||| |||||||||||||| ||||  |||||||| |||| ||||||||||||    
T  28857026 ttttgatgataa-aaagtattgaagaataattagaatactaatatatattcaagtgtgca 28857084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 12863845 - 12863812
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    ||||||||||||||||||||||||| ||||||||    
T  12863845 gttttgatgataacaaagtattgaacaacaattg 12863812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 24276857 - 24276890
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    ||||||||||||||||||||||| ||||||||||    
T  24276857 gttttgatgataacaaagtattgtagaacaattg 24276890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 23432674 - 23432726
Alignment:
Q  261 tatgaagagcatcagaaggagattgagaagcttagaagactatggtggaagat 313  Q
    |||||| ||||||| |||||   ||| ||||||||||||||||||||||||||    
T  23432674 tatgaaaagcatcataaggaacatgaaaagcttagaagactatggtggaagat 23432726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 174 - 362
Target Start/End: Complemental strand, 25348530 - 25348341
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatc 273  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | ||||| |||||| |||||||| | |||||||||||||    
T  25348530 ttttgatgataacaaagtattgaagaacaattgatatactaacatatgttcaagtgtgcaggatctacgtatcatgaagaaggatcatatgaagagcatc 25348431  T
Q  274 agaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaac-cgttgtcaacgtccttagtagaaggaactctca 362  Q
    | || | |||| |||||||||||||| |||||||||||||||||| || ||| |||  |  ||| ||||||||||||||||||| |||||    
T  25348430 ataaagggattaagaagcttagaagaatatggtggaagatctactagatggttaactagaagtcgacgtccttagtagaaggaagtctca 25348341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 172 - 329
Target Start/End: Original strand, 16197122 - 16197278
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    ||||| ||||||||||| |||||||||||||||||  ||||||| ||||||||||||||||| | ||||| |||||| |||||||||| ||| ||||| |    
T  16197122 ggtttggatgataacaaggtattgaagaacaattgatatactaatatatgttcaagtgtgca-gatctacttatcatgaagaaggaacatataaagagaa 16197220  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaac 329  Q
    ||| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  16197221 tcataaagagattcagaagcttagaagactatggtagaagatctactggaaggtcaac 16197278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 328
Target Start/End: Complemental strand, 24216439 - 24216284
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    |||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||| | |||     || |||| |||||| ||| |||||||||||    
T  24216439 ggttttgatgataacagagtattgaagaacaattggattacgaacatatgttcaagtgtac-agtaacttctgtcatgaagaagaaacatatgaagagca 24216341  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaa 328  Q
    |||||| ||||| |  ||||||||||||||||||   | ||||||||| ||||||||    
T  24216340 tcagaaagagatcggaaagcttagaagactatggataacgatctactgaaaggtcaa 24216284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 26654343 - 26654404
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  26654343 ggttttgatgataacaaagtattgaagaacaattggaagactaacatatgttcaagtgtgca 26654404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 26652803 - 26652862
Alignment:
Q  175 tttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaa 234  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  26652803 tttgatgataacaaagtattgaagaacaattggaatactaacatatgtttaagtgtgcaa 26652862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 329
Target Start/End: Complemental strand, 8686120 - 8685956
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagt-------tctacctatcataaagaaggaacgtatg 264  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||  |       | || ||||||| | |||  ||  ||||    
T  8686120 ggttttgatgataataaagtatcgaagaacaattggaatactaacatatgttcaaatgtgcagatccaagaatatatctatcatgaggaaataaaatatg 8686021  T
Q  265 aagagcatcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaac 329  Q
    || |||||||||||||   ||| |||||||||||||||||||  ||||||||  |||||||||||    
T  8686020 aaaagcatcagaaggaacatgaaaagcttagaagactatggttaaagatctaaaggaaggtcaac 8685956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 22311217 - 22311279
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| || ||||||||||||||    
T  22311217 ggttttgatgataacaaagtattgaagaacaattggatatactaatatttgttcaagtgtgca 22311279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 24764139 - 24764201
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgcaag 235  Q
    ||||||||||||||||||||||||||||| ||| | ||||||| || ||||||||||||||||    
T  24764139 ttttgatgataacaaagtattgaagaacacttggatatactaatatttgttcaagtgtgcaag 24764201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 16151879 - 16151924
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaaca 217  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||    
T  16151879 ggttttgatgataacagagtattgaagaacaattggaatactaaca 16151924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 17417096 - 17417155
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaatt-gtaatactaacatatgttcaagtgtg 231  Q
    ||||||||||||||||||||||||||||||||| || | ||||| || ||||||||||||    
T  17417096 gttttgatgataacaaagtattgaagaacaattggtcaaactaatatttgttcaagtgtg 17417155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 16973524 - 16973557
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaatt 205  Q
    ||||||||||||||||||||||||||||||||||    
T  16973524 ggttttgatgataacaaagtattgaagaacaatt 16973557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 25916214 - 25916275
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    |||||||| ||||||||||||||||||||||||| | ||||||| || |||| |||||||||    
T  25916214 gttttgatcataacaaagtattgaagaacaattggatatactaatatttgtttaagtgtgca 25916275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 21547905 - 21547965
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtg 231  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||| || | ||||||||||    
T  21547905 ggttttgatgataccaaagtattgaagaacaattggatatactaatattttttcaagtgtg 21547965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 18848797 - 18848739
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgt 230  Q
    ||||| |||||||||||||||||||||||||||| | ||  ||| ||||||||||||||    
T  18848797 gtttttatgataacaaagtattgaagaacaattggatatgataatatatgttcaagtgt 18848739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 11871935 - 11871902
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    |||||||||||||||| |||||||||||||||||    
T  11871935 gttttgatgataacaaggtattgaagaacaattg 11871902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 42256637 - 42256604
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    |||||||||||||||||||||| |||||||||||    
T  42256637 gttttgatgataacaaagtattaaagaacaattg 42256604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 172 - 330
Target Start/End: Complemental strand, 14201747 - 14201589
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| ||| ||| | |||| | |||||| ||| |||||||||||    
T  14201747 ggttttgatgataacaaagtattaaagtacaattggaatactaacatatgttcaagtgtggaagatctgcttatcttgaagaagaaacatatgaagagca 14201648  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    ||| ||   ||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  14201647 tcaaaaaaggattgggaagtttagaagactatggtggaagatctactggaaggtcaacc 14201589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 172 - 330
Target Start/End: Original strand, 21686684 - 21686842
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |  ||   |||||| |||||||||| |||||||||||    
T  21686684 ggtttttatgatgacaaagtattgaagaacaattggaatactaacatatgttcaagtgtgcaggaactcgttatcatgaagaaggaacatatgaagagca 21686783  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    |||| | | ||||| |||||||||||||||||||||||||||||| | |||||||||||    
T  21686784 tcagtaagggattgggaagcttagaagactatggtggaagatctattagaaggtcaacc 21686842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 172 - 330
Target Start/End: Complemental strand, 19731970 - 19731812
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||   |||||| ||||| || || | || |||||||| ||    
T  19731970 ggttgtgatgataacaaagtattgatgaacaattggaatactaacatatgttcaagtgtgcagaatctacccatcatgaacaaaggacatatgaagacca 19731871  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    |||||| | ||||| |||||| ||||||||||||||||||||| |  ||||||||||||    
T  19731870 tcagaaagggattgggaagctaagaagactatggtggaagatccaaaggaaggtcaacc 19731812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 172 - 325
Target Start/End: Complemental strand, 27124761 - 27124606
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||| | |||   |||| | |||||||||| |||||||||||    
T  27124761 ggttttgatgataacaaagtattgaagaacaattggtatactaacatatgatcaagtgtgcaggatctctttatcttgaagaaggaacatatgaagagca 27124662  T
Q  272 tc--agaaggagattgagaagcttagaagactatggtggaagatctactggaaggt 325  Q
    ||  |||| | ||||| ||| |||  || |||||||||||||||||||||||||||    
T  27124661 tcagagaaagggattgggaaacttcaaatactatggtggaagatctactggaaggt 27124606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 1637096 - 1636959
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    ||||| |||| |||||||||||||||||||||||   ||||||||||||||||||||||||| ||| || ||  ||| |||||||||| |||||||||||    
T  1637096 ggtttagatggtaacaaagtattgaagaacaatttgtatactaacatatgttcaagtgtgcaggttatatctgccatgaagaaggaacatatgaagagca 1636997  T
Q  272 tcagaaggagattgagaagcttagaagactatggtgga 309  Q
    ||| || |  ||| ||||||||||||||||||||||||    
T  1636996 tcataaaggaatttagaagcttagaagactatggtgga 1636959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 19134166 - 19134107
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  19134166 ttttgatgatatcaaagtattgaagaacaattggaatactaacatgtgttcaagtgtgca 19134107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 7775130 - 7775188
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgt 230  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  7775130 ggttttgatgataacaaagtattgaagaataattgaaatactaatatatgttcaagtgt 7775188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 239490 - 239550
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||    
T  239490 gttttgatgataacaaagtatttaagaaaaattggaatactaacatatgttcaagtttgca 239550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 10482520 - 10482461
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  10482520 ttttgaagataacaaagtattgaaaaacaattggaatactaacatatgttcaattgtgca 10482461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 28952274 - 28952332
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtg 231  Q
    ||||||||||||| |||||||||||||||||||| | ||||| ||||||||||||||||    
T  28952274 gttttgatgataataaagtattgaagaacaattggattactaccatatgttcaagtgtg 28952332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 225889 - 225831
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgt 230  Q
    ||||||||| ||||||||||||| ||||| ||||| ||| |||||||||||||||||||    
T  225889 ggttttgataataacaaagtatttaagaagaattgaaatcctaacatatgttcaagtgt 225831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 18614938 - 18615000
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgta--atactaacatatgttcaagtgtgca 233  Q
    |||||||||||||||||||||||||||||||| ||||  ||||||| || ||||||||||||||    
T  18614938 ggttttgatgataacaaagtattgaagaacaa-tgtaatatactaatatttgttcaagtgtgca 18615000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 10821539 - 10821477
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaatt-gtaatactaacatatgttcaagtgtgca 233  Q
    |||||||||||||||||||||||||||||||||| |  ||| ||| || ||||||||||||||    
T  10821539 ggttttgatgataacaaagtattgaagaacaattagatatattaatatgtgttcaagtgtgca 10821477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 19134082 - 19133976
Alignment:
Q  250 aagaaggaacgtatgaagagcatcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc-gttgtcaacgtccttagt 348  Q
    ||||| |||| ||||||||||||||||||||    |||||||||| ||||| ||||| ||| |||||  |||||||| ||| |  ||||||||||||||     
T  19134082 aagaatgaacatatgaagagcatcagaaggaccaagagaagcttataagaccatggtagaatatctaaaggaaggtcgaccagaagtcaacgtccttaga 19133983  T
Q  349 agaagga 355  Q
    |||||||    
T  19133982 agaagga 19133976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 26239052 - 26239019
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    ||||||||||||||||||||||||||||||||||    
T  26239052 gttttgatgataacaaagtattgaagaacaattg 26239019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 24576214 - 24576181
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    |||||||||||||||||||||| |||||||||||    
T  24576214 gttttgatgataacaaagtattcaagaacaattg 24576181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 29032441 - 29032408
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    |||||||||||||||||||||| |||||||||||    
T  29032441 gttttgatgataacaaagtattaaagaacaattg 29032408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 21318820 - 21318663
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatc 273  Q
    |||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||   |||||||||||| ||||| |||| | |||| ||||||    
T  21318820 ttttgatgataataaagtattgaagaacaattggaatactaacaaatgttcaagtgtgcataatctacctatcattaagaaagaacatgtgaaaagcatc 21318721  T
Q  274 agaaggagattgagaagcttagaagacta-tggtggaagatctactggaaggtcaacc 330  Q
    |||| | ||||| ||| |||||||||||| ||||||||||||||||||||||||||||    
T  21318720 agaaagggattgggaaccttagaagactattggtggaagatctactggaaggtcaacc 21318663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 172 - 316
Target Start/End: Original strand, 13340421 - 13340565
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||  ||  |||| ||||||| |||||  ||| |||||||||||    
T  13340421 ggttttgatgataacaaagtattgaagaacaattggaatactaacatacgttcaagtgtataaaatctatctatcatgaagaaataacatatgaagagca 13340520  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatcta 316  Q
    | |||||||  | ||||||| |||||||||||| |||||||||||    
T  13340521 taagaaggaactggagaagcctagaagactatgatggaagatcta 13340565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 173 - 362
Target Start/End: Complemental strand, 44755423 - 44755233
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcat 272  Q
    |||||||||||||||||| |||||  |||||||   ||||||||||||||||||||||||| | ||| | |||||| |||||||||| ||| ||||||||    
T  44755423 gttttgatgataacaaagcattgagaaacaatttgtatactaacatatgttcaagtgtgcatgatctccttatcatgaagaaggaacatattaagagcat 44755324  T
Q  273 -cagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaaccgt-tgtcaacgtccttagtagaaggaactctca 362  Q
      | || | ||||| |||||||||||||||||| ||||||||| ||||||||||||||| |  |||||| |||||||||||||||| |||||    
T  44755323 aaaaaaagggattg-gaagcttagaagactatgatggaagatccactggaaggtcaaccataagtcaacttccttagtagaaggaagtctca 44755233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 172 - 330
Target Start/End: Original strand, 13177521 - 13177679
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||  |||| ||||||| |||||  ||| |||||||||||    
T  13177521 ggttttgatgataaaaaagtattgaagaacaattggaatactaacatacgttcaagtgtgtaaaatctatctatcatgaagaaataacatatgaagagca 13177620  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    | |||||||    ||||||| |||||||||||| |||||||||||  |||| |||||||    
T  13177621 taagaaggaaccggagaagcctagaagactatgatggaagatctaaaggaaagtcaacc 13177679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 355
Target Start/End: Complemental strand, 9324028 - 9323836
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagt-------tctacctatca-taaagaaggaacgtat 263  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| |       |  | |||||| ||||| | |||  |||    
T  9324028 ggttttgatgataacaaagtattgaagaacaattggaatactaacatacgttcaagtgtacaaatcaaataatgaatctatcattaaaggatgaaaatat 9323929  T
Q  264 gaagagcatcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc-gttgtcaacgtccttagtagaagga 355  Q
    ||||| |||||||||||   ||||||| ||||||||||||||| |||||||||  ||||| |||||| |  ||||| |||||||| |||||||    
T  9323928 gaagaacatcagaaggaacatgagaagtttagaagactatggtagaagatctaaaggaagctcaaccagaagtcaatgtccttagaagaagga 9323836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 11360485 - 11360544
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  11360485 ttttgatgatgacaaagtattgaagaacaattggaatactaacatatgttcaagtctgca 11360544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 15330957 - 15331011
Alignment:
Q  180 tgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaa 234  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  15330957 tgataacaaagtattgaagaacaattggaatactaacatatgttcaagtgcgcaa 15331011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 20311361 - 20311422
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    |||||||||||||||||||||| ||||||||||| | || |||| |||||||||||||||||    
T  20311361 gttttgatgataacaaagtatttaagaacaattggatatgctaatatatgttcaagtgtgca 20311422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 14426905 - 14426965
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    ||||||||||||||||||||| ||||||||||| | || |||| |||||||||||||||||    
T  14426905 ttttgatgataacaaagtattaaagaacaattggatatgctaatatatgttcaagtgtgca 14426965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 16198665 - 16198727
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    ||||||| ||||||||||||||||||||| ||||| | ||||||| || ||||||||||||||    
T  16198665 ggttttgttgataacaaagtattgaagaataattggatatactaatatttgttcaagtgtgca 16198727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 38076025 - 38076085
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaatt-gtaatactaacatatgttcaagtgtgca 233  Q
    ||||||||| |||||||||||||||||||||| |  ||||||| ||||| |||||||||||    
T  38076025 ttttgatgacaacaaagtattgaagaacaattagatatactaatatatgctcaagtgtgca 38076085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 46349463 - 46349403
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    ||||||||||||||||||||||||||||||| | | ||| ||| || ||||||||||||||    
T  46349463 ttttgatgataacaaagtattgaagaacaatagaatatattaatatttgttcaagtgtgca 46349403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 4767354 - 4767416
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaatt-gtaatactaacatatgttcaagtgtgca 233  Q
    ||||||||||||||||||||||| ||||| |||| |  || |||| |||||||||||||||||    
T  4767354 ggttttgatgataacaaagtattaaagaataattagatatgctaatatatgttcaagtgtgca 4767416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 11045061 - 11045031
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaat 204  Q
    |||||||||||||||||||||||||||||||    
T  11045061 ttttgatgataacaaagtattgaagaacaat 11045031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 14322976 - 14322942
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgt 207  Q
    |||||||||||||||||||||||||||||| ||||    
T  14322976 gttttgatgataacaaagtattgaagaacagttgt 14322942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 9796609 - 9796548
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    ||||||||||||| |||||||| ||||||||||| | ||  ||| |||||||||||||||||    
T  9796609 gttttgatgataataaagtattaaagaacaattggatatgttaatatatgttcaagtgtgca 9796548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 202
Target Start/End: Complemental strand, 14328744 - 14328715
Alignment:
Q  173 gttttgatgataacaaagtattgaagaaca 202  Q
    ||||||||||||||||||||||||||||||    
T  14328744 gttttgatgataacaaagtattgaagaaca 14328715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 17034139 - 17034172
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    |||||||||||||||| |||||||||||||||||    
T  17034139 gttttgatgataacaatgtattgaagaacaattg 17034172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 23953632 - 23953665
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    |||||||||||||||||||||| |||||||||||    
T  23953632 gttttgatgataacaaagtattaaagaacaattg 23953665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 4253336 - 4253304
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaatt 205  Q
    |||||||| ||||||||||||||||||||||||    
T  4253336 gttttgataataacaaagtattgaagaacaatt 4253304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 5638327 - 5638359
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaatt 205  Q
    |||||||| ||||||||||||||||||||||||    
T  5638327 gttttgataataacaaagtattgaagaacaatt 5638359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 172 - 330
Target Start/End: Complemental strand, 25570200 - 25570042
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||   | ||| |||||| |||||| ||| |||||||||||    
T  25570200 ggttttgatgataacaaagtattgaagaacaattggattactaacatatgttcaagtgtgcataatttacttatcatgaagaagaaacatatgaagagca 25570101  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    |||  | | ||||| ||| |||||||||||||| || ||||||||| ||||||||||||    
T  25570100 tcattaagggattgggaaacttagaagactatgatgaaagatctaccggaaggtcaacc 25570042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 28760904 - 28760744
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacata----tgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagag 269  Q
    |||||||||||||||||||||||||||||||||  |||||||||||    ||||||| |||||| | ||| | |||||| |||||||||| ||||||||     
T  28760904 ttttgatgataacaaagtattgaagaacaattggtatactaacatacatatgttcaaatgtgcaggatctccttatcatgaagaaggaacatatgaagat 28760805  T
Q  270 catcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    ||||| || |||||||  ||||||| ||||||||| ||||| ||||||| |||||||||||    
T  28760804 catcataaagagattggaaagcttataagactatgctggaaaatctactagaaggtcaacc 28760744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 362
Target Start/End: Original strand, 24884889 - 24885078
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatc 273  Q
    ||||||||||||||||||||| ||||| |||||  ||||||||||||||||||||||||| | | | | |||||| ||||| |||| |||||||| | |     
T  24884889 ttttgatgataacaaagtattaaagaataattgatatactaacatatgttcaagtgtgcatgatttccttatcatgaagaacgaacatatgaagatctta 24884988  T
Q  274 agaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaac-cgttgtcaacgtccttagtagaaggaactctca 362  Q
    | || | | ||  ||||| |||||||||||| ||||||||||||| ||||||||||  |  ||||||  ||||||||||||||| |||||    
T  24884989 ataaaggggtttggaagcatagaagactatgttggaagatctacttgaaggtcaactagaagtcaacaaccttagtagaaggaagtctca 24885078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 9824725 - 9824664
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9824725 ggttttgatgataacaaagtattgaagaacaattgaaatactaacatatgttcaagtgtgca 9824664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 330
Target Start/End: Complemental strand, 24164133 - 24163991
Alignment:
Q  187 aaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatcagaaggagattga 286  Q
    |||||||||||||| ||||| | |||||| ||| ||||||||||||| |  |||  |||||| |||||||||| ||||||||||||||||| |||||||     
T  24164133 aaagtattgaagaataattgaattactaaaataggttcaagtgtgcaggaactat-tatcatgaagaaggaacatatgaagagcatcagaaagagattgg 24164035  T
Q  287 gaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
     |||||||||||||| |||   ||||||||||  ||||||||||    
T  24164034 aaagcttagaagactctggataaagatctactaaaaggtcaacc 24163991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 16791012 - 16790917
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaac--atatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatga 265  Q
    ||||||||||||| |||||||||||| |||||||| |||||||||  |||||||||||||  || | ||||| |||||| |||||||||| |||||    
T  16791012 ggttttgatgatagcaaagtattgaaaaacaattgaaatactaacttatatgttcaagtgcacatgatctacttatcatgaagaaggaacatatga 16790917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 24492085 - 24492145
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtg 231  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| || ||||||||||||    
T  24492085 ggttttgatgataacaaagtattgaagaacaattggatatactaatatttgttcaagtgtg 24492145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 21215335 - 21215394
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    ||||||||||||||||||||||||||  ||||  ||||| ||||||||||||||||||||    
T  21215335 ttttgatgataacaaagtattgaagagtaattagaatacgaacatatgttcaagtgtgca 21215394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 21216101 - 21216238
Alignment:
Q  199 aacaattgtaatactaacatatgttcaagtgtgcaagttc-------tacctatcataaagaaggaacgtatgaagagcatcagaaggagattgagaagc 291  Q
    |||||||| ||||||||||||||||||||||||||  | |       || ||||||| | |||  ||| |||||||||||||| | |||   ||||||||    
T  21216101 aacaattggaatactaacatatgttcaagtgtgcagatccaagaatatatctatcatgaggaaataacatatgaagagcatcatacggaacatgagaagc 21216200  T
Q  292 ttagaagactatggtggaagatctactggaaggtcaac 329  Q
    ||| |||||||||||||||||||||  ||| |||||||    
T  21216201 ttataagactatggtggaagatctaaaggacggtcaac 21216238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 21215417 - 21215499
Alignment:
Q  248 taaagaaggaacgtatgaagagcatcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    ||||||| |||| |||||||||||||||||| |   |||||| ||||||| |||||||| |||||| ||  ||||||||||||    
T  21215417 taaagaatgaacatatgaagagcatcagaagaaacatgagaatcttagaaaactatggtagaagatgtaagggaaggtcaacc 21215499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 26335230 - 26335284
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaa 226  Q
    ||||||||||||||||| |||| ||||||||||| | ||||||| ||||||||||    
T  26335230 gttttgatgataacaaattattaaagaacaattggatatactaatatatgttcaa 26335284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 172 - 330
Target Start/End: Complemental strand, 129467 - 129309
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||  |||| ||||||| |||||  ||| |||||||||||    
T  129467 ggttttgatgataaaaaagtattgaagaacaattggaatactaacatacgttcaagtgtgtaaaatctatctatcatgaagaaataacatatgaagagca 129368  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    | |||||||    ||||||| |||||||||||| |||||||||||  |||| |||||||    
T  129367 taagaaggaaccggagaagcctagaagactatgatggaagatctaaaggaaagtcaacc 129309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 7629 - 7783
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatc 273  Q
    ||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| | |  || | |||||| ||||| |||| |||||||||||||    
T  7629 ttttgatgataacaaagtattcaagaacaattggattactaacatatgttcaagtgtgaaggaact-cttatcattaagaaagaacatatgaagagcatc 7727  T
Q  274 agaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaac 329  Q
    |||| ||||||| ||||||||||||||||||   ||| ||||| || |||||||||    
T  7728 agaaagagattgggaagcttagaagactatgaatgaaaatctattgaaaggtcaac 7783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 174 - 355
Target Start/End: Original strand, 22316363 - 22316552
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagt-------tctacctatcataaagaaggaacgtatgaa 266  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |       | || ||||| | ||||| |||| ||||||    
T  22316363 ttttgatgataacaaagtattgaagaacaattggaatactaacatatgttcaagtgtgcagatctaagaatatatctatcttgaagaaagaacatatgaa 22316462  T
Q  267 gagcatcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc-gttgtcaacgtccttagtagaagga 355  Q
    ||||||||||||||    |||||||||||||||||||| |  ||||||||  |||||||||||| |  |||||||||||||| |||||||    
T  22316463 gagcatcagaaggaacaagagaagcttagaagactatgttaaaagatctaaaggaaggtcaaccagaagtcaacgtccttagaagaagga 22316552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 173 - 330
Target Start/End: Original strand, 5842473 - 5842630
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcat 272  Q
    ||||||||||||||||||||||||| || ||| | ||||||||||||||||||||||||||   |||| ||||||| ||||| | || ||||||||||||    
T  5842473 gttttgatgataacaaagtattgaaaaataatagaaatactaacatatgttcaagtgtgcagaatctatctatcatgaagaaaggacatatgaagagcat 5842572  T
Q  273 cagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    || || | ||||| |||||||| |||| | |||| ||||||  |  ||||||||||||    
T  5842573 caaaatgggattgggaagcttaaaagattgtggtagaagattcaaaggaaggtcaacc 5842630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 330
Target Start/End: Original strand, 16321852 - 16322018
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttcta--------cctatcataaagaaggaacgtat 263  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||   ||||         ||||||| ||||| |||| |||    
T  16321852 ggttttgatgataacaaagtattgaagaacaatttgaatactaacatatgttcaagtgtgcagaatctaagaatgagtctatcatgaagaatgaacatat 16321951  T
Q  264 gaagagcatcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    ||||||||||| || ||    |||||||||||||||||||||| |||||| ||  ||||||| ||||    
T  16321952 gaagagcatcaaaaagaacaggagaagcttagaagactatggtcgaagatataaaggaaggttaacc 16322018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 8912119 - 8912060
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  8912119 ttttgatgataacaaagcattgaagaacaattggaatactaacatatgttcaagtctgca 8912060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 12333744 - 12333801
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtg 229  Q
    |||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||    
T  12333744 ggttttgatgataacaaaatattgaagaacaattggattactaacatatgttcaagtg 12333801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 22222342 - 22222402
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtg 231  Q
    |||||||||||||||||||||||||||||||| || | ||||||| |||||||||||||||    
T  22222342 ggttttgatgataacaaagtattgaagaacaagtggacatactaatatatgttcaagtgtg 22222402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 8912034 - 8911928
Alignment:
Q  250 aagaaggaacgtatgaagagcatcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc-gttgtcaacgtccttagt 348  Q
    ||||| |||| | ||||||||||||||||||    |||||||||||||||| ||||| |||||||||  | |||||||||| |  ||||| ||||||||     
T  8912034 aagaatgaacatgtgaagagcatcagaaggatcaagagaagcttagaagacaatggtagaagatctaaagaaaggtcaaccagaagtcaatgtccttaga 8911935  T
Q  349 agaagga 355  Q
    |||||||    
T  8911934 agaagga 8911928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 20245801 - 20245768
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattg 206  Q
    ||||||||||||||||||||||||||||||||||    
T  20245801 gttttgatgataacaaagtattgaagaacaattg 20245768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 8677230 - 8677293
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgcaag 235  Q
    |||||||||||||||||||||| || |||||||| | ||  ||| |||||||||||||||||||    
T  8677230 gttttgatgataacaaagtattaaaaaacaattgaatatgttaatatatgttcaagtgtgcaag 8677293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 11449108 - 11449169
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    ||||||||||||||| | |||||||||||||||| | ||  ||| |||||||||||||||||    
T  11449108 gttttgatgataacacaatattgaagaacaattggacatgttaatatatgttcaagtgtgca 11449169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 47576075 - 47576018
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgt 230  Q
    ||||||||||||||||||||| ||||||| ||| | || |||| ||||||||||||||    
T  47576075 ttttgatgataacaaagtattaaagaacacttgaatatgctaatatatgttcaagtgt 47576018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 312
Target Start/End: Complemental strand, 7809 - 7669
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagca 271  Q
    ||||||||| |||||||||||||||| ||||||||  ||||||||||||||||||||||||| |  ||   |||||| ||||| |||| ||| |||||||    
T  7809 ggttttgatcataacaaagtattgaaaaacaattggtatactaacatatgttcaagtgtgcatgaactctttatcatgaagaaagaacatataaagagca 7710  T
Q  272 tcagaaggagattgagaagcttagaagactatggtggaaga 312  Q
    ||||||    ||||  ||||||||||||||||| |||||||    
T  7709 tcagaaaagaattggaaagcttagaagactatgatggaaga 7669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 309
Target Start/End: Complemental strand, 12527 - 12391
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcat 272  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||| | | || |  || | |||||| ||||| |||| ||| |||| |||    
T  12527 gttttgatgataacaaagtattgaagaacaattggtatactaacatatgttcaaatatacatgaactccttatcatgaagaatgaacatataaagatcat 12428  T
Q  273 cagaaggagattgagaagcttagaagactatggtgga 309  Q
    || || |  |||| ||||||| ||||| |||||||||    
T  12427 cataaaggaattgggaagcttggaagattatggtgga 12391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 79685 - 79552
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatacta-acatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcat 272  Q
    |||||||||||| ||| |||||||||| ||||| ||||||| |||||||||||||| ||||    || | |||||| |||||||||| |||||||| |||    
T  79685 ttttgatgataataaattattgaagaataattggaatactatacatatgttcaagtatgcattaact-cttatcatgaagaaggaacatatgaagatcat 79587  T
Q  273 cagaaggagattgagaagcttagaagactatggtg 307  Q
    ||||| | |||||  ||||||||||||||||||||    
T  79586 cagaaagggattggaaagcttagaagactatggtg 79552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 26941 - 26880
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    ||||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  26941 ggtttcgatgataacaaagtatcgaagaacaattggaatactaacatatgttaaagtgtgca 26880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 26848 - 26774
Alignment:
Q  256 gaacgtatgaagagcatcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    |||| ||||||||||||||||||||    ||||||||||||| |||||||| |||||||||  |||| |||||||    
T  26848 gaacatatgaagagcatcagaaggatcaagagaagcttagaatactatggtagaagatctaaaggaaagtcaacc 26774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 330
Target Start/End: Original strand, 56791 - 56944
Alignment:
Q  175 tttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtgcaagttctacctatcataaagaaggaacgtatgaagagcatca 274  Q
    |||||||||||||| |||||||||||||||||   || ||||| ||||||||||||||  |  || | |||||| |||||||||| ||| ||||||||||    
T  56791 tttgatgataacaaggtattgaagaacaattggtttattaacacatgttcaagtgtgcgggaact-cttatcatgaagaaggaacatataaagagcatca 56889  T
Q  275 gaaggagattgagaagcttagaagactatggtggaagatctactggaaggtcaacc 330  Q
    |||   |||| | ||  |||||||||| |||  |||||||||||| || |||||||    
T  56890 gaaaaggatt-acaaaattagaagactttggatgaagatctactgaaatgtcaacc 56944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 4756 - 4699
Alignment:
Q  174 ttttgatgataacaaagtattgaagaacaattgtaatactaacatatgttcaagtgtg 231  Q
    |||||||||||||||| |||||||||| ||||| |||| || ||||||||||||||||    
T  4756 ttttgatgataacaaactattgaagaataattggaatattagcatatgttcaagtgtg 4699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 1309 - 1356
Alignment:
Q  186 caaagtattgaagaacaattgtaatactaacatatgttcaagtgtgca 233  Q
    ||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  1309 caaagtattaaagaacaattggaatactaacatatgtttaagtgtgca 1356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 12845 - 12811
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattg 206  Q
    |||||||||||||||||||||||||||||||||||    
T  12845 ggttttgatgataacaaagtattgaagaacaattg 12811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 2962 - 2896
Alignment:
Q  261 tatgaagagcatcagaaggagattgagaagcttagaagactatggtggaagatctactggaaggtca 327  Q
    ||||||||||||||||||||    ||||||||| ||| ||||| ||||||||||||  |||||||||    
T  2962 tatgaagagcatcagaaggaacgagagaagcttggaatactatagtggaagatctaaaggaaggtca 2896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 28362 - 28300
Alignment:
Q  172 ggttttgatgataacaaagtattgaagaacaattgta-atactaacatatgttcaagtgtgca 233  Q
    |||||||||||||||||| ||||||||| |||||| | ||||||| || |||||||| |||||    
T  28362 ggttttgatgataacaaaatattgaagatcaattggatatactaatatttgttcaagagtgca 28300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 268 - 236
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaatt 205  Q
    ||||||||||||||||| |||||||||||||||    
T  268 gttttgatgataacaaaatattgaagaacaatt 236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 319068 - 319100
Alignment:
Q  173 gttttgatgataacaaagtattgaagaacaatt 205  Q
    ||||||||||||||||||||||||| |||||||    
T  319068 gttttgatgataacaaagtattgaaaaacaatt 319100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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