View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_high_11 (Length: 478)
Name: NF0493_high_11
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 30 - 466
Target Start/End: Original strand, 5161565 - 5162001
Alignment:
| Q |
30 |
ataatttcagaaaatgaactggaaagcaatgtcttgctttttgcttctacctattgggaatggattatctttgttgatgagagaatggtggaatctacac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5161565 |
ataatttcagaaaatgaactggaaagcaatgtcttgctttttgcttctacctattgggaatggattatctttgttgatgagagaatggtggaatctacac |
5161664 |
T |
|
| Q |
130 |
aattgaataaaaaaggtgagttttagatatgacaaagtttaaggatgagattgatgacatgacacattagagaacatgagagnnnnnnntggagattgca |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5161665 |
aattgaataaaaaaggtgagttttagatatgacaaagtttaaggatgagattgatgacatgacacattagagaacatgagagaaaaaaatggagattgca |
5161764 |
T |
|
| Q |
230 |
ttatatatgcagtgttggggtgcgaatccgtatttcccacttattcaccttaaaaggtgagatttcaatcattggactacttaac-nnnnnnnnttaatt |
328 |
Q |
| |
|
|||||||||| ||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5161765 |
ttatatatgcggtg-tcgggttcgaatccgtatttcccacttattcaccttaaaaggtgagatttcaatcattggactacttaacaaaaaaaaattaatt |
5161863 |
T |
|
| Q |
329 |
tctttaaaatggaattaatctataaacatctattacaattttttgtttagattgtctgctagagcttatggaaacaactaatgacaggtctttgttcatg |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5161864 |
tctttaaaatggaattaatctataaacatctattacagttttttttttggactgtctgctagagcttatggaaacaactaatgataggtctttgttcatg |
5161963 |
T |
|
| Q |
429 |
tgtcgattgaccggtcatattcgctggaactgttttca |
466 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5161964 |
tgtcgattgaccgatcatattcgctggaactgttttca |
5162001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 658 times since January 2019
Visitors: 3486