View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_high_21 (Length: 430)
Name: NF0493_high_21
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_21 |
 | |
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| [»] scaffold0466 (1 HSPs) |
| | |
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| [»] scaffold1041 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 60 - 401
Target Start/End: Complemental strand, 25495360 - 25495019
Alignment:
| Q |
60 |
caagaataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggacgtaccgaggatatgaattaacttctaaagagtttcaagagttt |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25495360 |
caagaataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggacgtaccgaggatatgaattaacttctaaagagtttcaagagttt |
25495261 |
T |
|
| Q |
160 |
gtgaaagagaattgaattaggcttcaactaacaaaacataacaaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgatatga |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25495260 |
gtgaaagagaattgaattaggcttcaactaacaaaacataacaaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgatatga |
25495161 |
T |
|
| Q |
260 |
ctcgaatcatgctcaaaagtaagaaactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtg |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25495160 |
ctcgaatcatgctcaaaagtaagaaactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtg |
25495061 |
T |
|
| Q |
360 |
tgtgaaaaacaccacaagagctagacgataagaaagccaaac |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25495060 |
tgtgaaaaacaccacaagagctagacgataagaaagccaaac |
25495019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 118 - 378
Target Start/End: Complemental strand, 25618388 - 25618150
Alignment:
| Q |
118 |
taccgaggatatgaattaacttctaaagagtttcaagagtttgtgaaagagaattgaattaggcttcaactaacaaaacataacaaattatggttggaac |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25618388 |
taccgaggatatgaattaatttctaaagagtttcaagagtttgtgaaagagaattgaattaggcttcaactaacaaaacaaaacaaattatg-------- |
25618297 |
T |
|
| Q |
218 |
catgatttttaggaaggaaaattagaacaattcttgatatgactcgaatcatgctcaaaagtaagaaactaccaaaataattgtggggttgaagttgtgg |
317 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
25618296 |
-------------aaggaaaattagaacaattgttgatatggctcgaatcatgctccaaagtaagaaactaccaaaataattgtgggttt-aagttgtgg |
25618211 |
T |
|
| Q |
318 |
cgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
378 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
25618210 |
cgtgtgtagtctaattaactaatagatctccaacaataagtatgtgaaaaacaccacaaga |
25618150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 202 - 378
Target Start/End: Complemental strand, 25651055 - 25650875
Alignment:
| Q |
202 |
aaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgatatgact-----cgaatcatgctcaaaagtaagaaactaccaaaata |
296 |
Q |
| |
|
||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
25651055 |
aaattatggttcgaaccatgctttgtaggaaggaaaattagaacaattcttgatatggcttggctcgaatcatgctcaaaagtaagaaactaccaaaata |
25650956 |
T |
|
| Q |
297 |
attgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
378 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
25650955 |
attgtggg-ttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaataccgcaaga |
25650875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 60 - 204
Target Start/End: Complemental strand, 25651309 - 25651165
Alignment:
| Q |
60 |
caagaataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggacgtaccgaggatatgaattaacttctaaagagtttcaagagttt |
159 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
25651309 |
caagaataacaaaggtactatcgagagaaccagcttgcagataaaagctatatggacgtaccgaagatgtgaattaacttctaaagagtttcaagagttt |
25651210 |
T |
|
| Q |
160 |
gtgaaagagaattgaattaggcttcaactaacaaaacataacaaa |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
25651209 |
gtgaaagataattgaattaggcttcaactaacaaaacagaacaaa |
25651165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 25359199 - 25359106
Alignment:
| Q |
284 |
aactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
378 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
25359199 |
aactaccaaaataattgttgg-ttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaaga |
25359106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 25399232 - 25399139
Alignment:
| Q |
284 |
aactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
378 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
25399232 |
aactaccaaaataattattgg-ttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaaga |
25399139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 25359256 - 25359196
Alignment:
| Q |
82 |
gagagaaccagcttgcagataa----aagctatatggacgtaccgaggatatgaattaact |
138 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25359256 |
gagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
25359196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 25399289 - 25399229
Alignment:
| Q |
82 |
gagagaaccagcttgcagataa----aagctatatggacgtaccgaggatatgaattaact |
138 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25399289 |
gagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
25399229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 25495412 - 25495379
Alignment:
| Q |
9 |
agcagagatcatacgttgaagcagagatcataag |
42 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
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|
| T |
25495412 |
agcagagatcataagttgaagcagagatcataag |
25495379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 64 - 378
Target Start/End: Original strand, 5996 - 6314
Alignment:
| Q |
64 |
aataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggacgtaccgaggatatgaattaacttctaaagagtttcaagagtttgtga |
163 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5996 |
aataacaaaggtaaaatcgagagaaccagcttacagataaaagctatatggacgtaccgaggatatgaattaacttctaaagagtttcaagagtttgtga |
6095 |
T |
|
| Q |
164 |
aagagaattgaattaggcttcaactaacaaaacataacaaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgata-----tg |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6096 |
aagagaattgaattaggcttcaactaacaaaacataacaaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgatatggcttg |
6195 |
T |
|
| Q |
259 |
actcgaatcatgctcaaaagtaagaaactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6196 |
gctcgaatcatgctcaaaagtaagaaactaccaaaataattgt-gggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagt |
6294 |
T |
|
| Q |
359 |
gtgtgaaaaacaccacaaga |
378 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6295 |
gtgtgaaaaacaccacaaga |
6314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 60 - 270
Target Start/End: Original strand, 348 - 549
Alignment:
| Q |
60 |
caagaataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggacgtaccgaggatatgaattaacttctaaagagtttcaagagttt |
159 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
348 |
caagaataacaaagctattatggagagaaccagcttgcagataaaagctatatggacgtaccgaggatatggattaacttctaaagagtttc-------- |
439 |
T |
|
| Q |
160 |
gtgaaagagaattgaattaggcttcaactaacaaaacataacaaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgatatga |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
440 |
-tgaaagagaattgaattaggcttcaactaacaaaacagaacaaattatggtccgaaccattctttttaggaaggaaaattagaacaattcttgatatgg |
538 |
T |
|
| Q |
260 |
ctcgaatcatg |
270 |
Q |
| |
|
||||||||||| |
|
|
| T |
539 |
ctcgaatcatg |
549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 15673539 - 15673487
Alignment:
| Q |
242 |
gaacaattcttgatatgactcgaatcatgctcaaaagtaagaaactaccaaaa |
294 |
Q |
| |
|
||||||| ||||||||| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
15673539 |
gaacaatacttgatatggctcgaagcatgctcaaaagtaagaatctaccaaaa |
15673487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 361
Target Start/End: Original strand, 32973413 - 32973519
Alignment:
| Q |
254 |
atatgactcgaatcatgctcaaaagtaagaaactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaa |
353 |
Q |
| |
|
||||| |||||| | || |||||| ||||||||||||||| |||| |||| ||||||||||| | |||| |||| | || |||||||||||||||||| |
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|
| T |
32973413 |
atatggctcgaagcttggtcaaaatcaagaaactaccaaaagaattttggg-ttgaagttgtgacatgtgcagtctatctatctaatagatctccaacaa |
32973511 |
T |
|
| Q |
354 |
taagtgtg |
361 |
Q |
| |
|
||||||| |
|
|
| T |
32973512 |
gaagtgtg |
32973519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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