View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_high_23 (Length: 420)

Name: NF0493_high_23
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_high_23
NF0493_high_23
[»] chr2 (17 HSPs)
chr2 (17-272)||(42364921-42365175)
chr2 (124-197)||(45302403-45302477)
chr2 (351-384)||(5028881-5028914)
chr2 (82-198)||(25998042-25998159)
chr2 (350-383)||(35458788-35458821)
chr2 (351-391)||(9547412-9547452)
chr2 (348-384)||(25603911-25603947)
chr2 (354-383)||(2264823-2264852)
chr2 (351-384)||(3904227-3904260)
chr2 (351-384)||(9391767-9391800)
chr2 (351-384)||(18611966-18611999)
chr2 (347-384)||(20120720-20120757)
chr2 (351-384)||(29896297-29896330)
chr2 (355-384)||(32957550-32957579)
chr2 (349-390)||(44026627-44026668)
chr2 (354-390)||(4238778-4238814)
chr2 (347-383)||(44198294-44198330)
[»] chr5 (14 HSPs)
chr5 (345-383)||(3052207-3052245)
chr5 (124-194)||(13696407-13696477)
chr5 (354-384)||(23118057-23118087)
chr5 (348-394)||(29225116-29225162)
chr5 (347-384)||(19647507-19647544)
chr5 (351-384)||(21657401-21657434)
chr5 (347-384)||(32559329-32559366)
chr5 (351-384)||(39963518-39963551)
chr5 (351-383)||(1809070-1809102)
chr5 (347-383)||(7215776-7215812)
chr5 (348-384)||(11647222-11647258)
chr5 (348-384)||(19248504-19248540)
chr5 (347-383)||(27679524-27679560)
chr5 (351-391)||(29695033-29695073)
[»] chr4 (25 HSPs)
chr4 (330-384)||(32923185-32923239)
chr4 (337-390)||(48226487-48226540)
chr4 (351-390)||(22411783-22411822)
chr4 (350-384)||(160734-160768)
chr4 (354-384)||(1657036-1657066)
chr4 (354-384)||(21266888-21266918)
chr4 (341-383)||(38939527-38939569)
chr4 (354-384)||(45029611-45029641)
chr4 (351-384)||(4916180-4916213)
chr4 (351-384)||(22164272-22164305)
chr4 (337-390)||(22540795-22540848)
chr4 (347-384)||(24675068-24675105)
chr4 (345-390)||(28435245-28435290)
chr4 (350-387)||(29731381-29731418)
chr4 (351-384)||(32268106-32268139)
chr4 (351-384)||(38767037-38767070)
chr4 (351-384)||(46434763-46434796)
chr4 (350-390)||(8734869-8734909)
chr4 (351-391)||(9783917-9783957)
chr4 (351-383)||(18903761-18903793)
chr4 (351-391)||(22040668-22040708)
chr4 (331-391)||(39146660-39146720)
chr4 (352-384)||(39842016-39842048)
chr4 (347-391)||(48159695-48159739)
chr4 (125-161)||(55517468-55517504)
[»] chr6 (13 HSPs)
chr6 (331-384)||(10497135-10497188)
chr6 (351-391)||(24623320-24623360)
chr6 (354-384)||(9333986-9334016)
chr6 (354-384)||(9973243-9973273)
chr6 (351-384)||(1989046-1989079)
chr6 (351-384)||(8138461-8138494)
chr6 (346-379)||(8311500-8311533)
chr6 (351-384)||(15169956-15169989)
chr6 (351-384)||(15178728-15178761)
chr6 (351-383)||(6503286-6503318)
chr6 (351-383)||(10018425-10018457)
chr6 (351-383)||(12459744-12459776)
chr6 (351-391)||(24212542-24212582)
[»] chr7 (12 HSPs)
chr7 (345-391)||(14623482-14623528)
chr7 (348-384)||(34897535-34897571)
chr7 (351-383)||(45151403-45151435)
chr7 (332-378)||(16355544-16355589)
chr7 (354-384)||(38553843-38553873)
chr7 (347-384)||(8261442-8261479)
chr7 (351-384)||(25251535-25251568)
chr7 (350-383)||(34000288-34000321)
chr7 (347-383)||(1046582-1046618)
chr7 (351-383)||(23374633-23374665)
chr7 (348-384)||(35666328-35666364)
chr7 (349-392)||(48284802-48284846)
[»] chr3 (14 HSPs)
chr3 (348-390)||(19126677-19126719)
chr3 (330-384)||(28965759-28965813)
chr3 (347-383)||(48376861-48376897)
chr3 (350-384)||(43630420-43630454)
chr3 (346-384)||(55395322-55395360)
chr3 (351-384)||(2078265-2078298)
chr3 (351-384)||(20612280-20612313)
chr3 (351-384)||(21245818-21245851)
chr3 (351-384)||(35392028-35392061)
chr3 (347-384)||(45334214-45334251)
chr3 (346-383)||(47099033-47099070)
chr3 (104-167)||(13879878-13879941)
chr3 (346-390)||(39779043-39779087)
chr3 (348-384)||(52543692-52543728)
[»] chr8 (16 HSPs)
chr8 (347-384)||(27571848-27571885)
chr8 (351-392)||(32115409-32115450)
chr8 (347-383)||(13958837-13958873)
chr8 (348-384)||(1135393-1135430)
chr8 (351-384)||(1230664-1230697)
chr8 (347-384)||(5797276-5797313)
chr8 (346-383)||(35149258-35149295)
chr8 (351-384)||(41603086-41603119)
chr8 (351-383)||(3650546-3650578)
chr8 (351-391)||(6038278-6038318)
chr8 (348-384)||(12714370-12714406)
chr8 (351-391)||(26991760-26991800)
chr8 (351-383)||(28439985-28440017)
chr8 (347-383)||(28580970-28581006)
chr8 (346-390)||(33373750-33373794)
chr8 (115-190)||(34741713-34741789)
[»] chr1 (14 HSPs)
chr1 (350-390)||(3248796-3248836)
chr1 (114-197)||(11212846-11212930)
chr1 (345-384)||(34083362-34083401)
chr1 (349-391)||(33175279-33175321)
chr1 (347-384)||(9413823-9413860)
chr1 (351-384)||(13401622-13401655)
chr1 (350-391)||(35632917-35632958)
chr1 (351-384)||(43356460-43356493)
chr1 (331-384)||(46539051-46539104)
chr1 (347-380)||(49196385-49196418)
chr1 (351-379)||(15670645-15670673)
chr1 (347-383)||(34599918-34599954)
chr1 (351-387)||(42440151-42440187)
chr1 (348-384)||(44678017-44678053)
[»] scaffold0066 (1 HSPs)
scaffold0066 (347-389)||(17524-17566)
[»] scaffold1149 (1 HSPs)
scaffold1149 (351-384)||(2357-2390)
[»] scaffold0011 (1 HSPs)
scaffold0011 (351-384)||(189975-190008)
[»] scaffold0350 (1 HSPs)
scaffold0350 (351-391)||(1266-1306)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 42364921 - 42365175
Alignment:
Q  17 atgaatgtcaccttagaggaggttggtatgaatttgcaaagagtctgtctaatatgtataaatatttgcatatgttaaaccaaccacaagtggaaacttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  42364921 atgaatgtcaccttagaggaggttggtatgaatttgcaaagagtctgtctaatatatataa-tatttgcatatgttaaaccaaccacaagtggaaacttt 42365019  T
Q  117 ttatttgaaaacaataattatttattaaacaatacatatttaatgttaaatacataaattcaaatgcaaacttacttttttacatgtacaaatttacata 216  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| || |    
T  42365020 ttattgaaaaacaataattatttattaaacaatacatatttaatgttaaatgcataaattcaaatgcaaacttacttttttgcatatacaaattttcaca 42365119  T
Q  217 cgatagaaaaaactcatttgcaaaaagccaaaacttcaagtttgataataagttgg 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42365120 cgatagaaaaaactcatttgcaaaaagccaaaacttcaagtttgatgataagttgg 42365175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 45302403 - 45302477
Alignment:
Q  124 aaaacaataattatttattaaacaa-tacatatttaatgttaaatacataaattcaaatgcaaacttactttttt 197  Q
    |||||||||||||||||||||| || || ||||||||| | |||| ||||||||| ||| |||||||||| ||||    
T  45302403 aaaacaataattatttattaaaaaattatatatttaatataaaatgcataaattctaatacaaacttactatttt 45302477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 5028914 - 5028881
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||||||||||||||||||||    
T  5028914 tttgaaccccaaaccttacatatattatgcattg 5028881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 25998159 - 25998042
Alignment:
Q  82 ttgcatatgttaaaccaaccacaagtggaaactttttatttgaaaacaataattatttattaaaca-atacatatttaatgttaaatacataaattcaaa 180  Q
    ||||| ||||||||  ||| | ||||| ||||||||||||  ||||||| |||||||||||||| | ||||||||||| | ||||||  | || ||| ||    
T  25998159 ttgcacatgttaaagtaactaaaagtgaaaactttttattgaaaaacaacaattatttattaaaaagatacatatttattattaaatgaacaagttccaa 25998060  T
Q  181 tgcaaacttactttttta 198  Q
    |||||| ||| |||||||    
T  25998059 tgcaaaattaatttttta 25998042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 35458788 - 35458821
Alignment:
Q  350 atttgaaccccaaaccttacatatattatgcatt 383  Q
    ||||||||||||||||||||||||||||||||||    
T  35458788 atttgaaccccaaaccttacatatattatgcatt 35458821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 9547412 - 9547452
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    ||||||||||||||||| |||||||||||||||| ||||||    
T  9547412 tttgaaccccaaaccttgcatatattatgcattgtccatat 9547452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 25603911 - 25603947
Alignment:
Q  348 ggatttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||||||| |||||||||||||||    
T  25603911 ggatttgaaccccaaaccttatatatattatgcattg 25603947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 383
Target Start/End: Complemental strand, 2264852 - 2264823
Alignment:
Q  354 gaaccccaaaccttacatatattatgcatt 383  Q
    ||||||||||||||||||||||||||||||    
T  2264852 gaaccccaaaccttacatatattatgcatt 2264823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 3904260 - 3904227
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||| ||||||||||||||||||||||    
T  3904260 tttgaaccccagaccttacatatattatgcattg 3904227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 9391767 - 9391800
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||||||||||| ||||||||    
T  9391767 tttgaaccccaaaccttacatatatcatgcattg 9391800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 18611966 - 18611999
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||| ||||||||||||||||    
T  18611966 tttgaaccccaaaccttgcatatattatgcattg 18611999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 20120720 - 20120757
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  20120720 gggatttgaaccccgaaccttgcatatattatgcattg 20120757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 29896297 - 29896330
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||| ||||||||||||||||    
T  29896297 tttgaaccccaaaccttgcatatattatgcattg 29896330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 384
Target Start/End: Original strand, 32957550 - 32957579
Alignment:
Q  355 aaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||||||||||||||||    
T  32957550 aaccccaaaccttacatatattatgcattg 32957579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 44026668 - 44026627
Alignment:
Q  349 gatttgaaccccaaaccttacatatattatgcattgcccata 390  Q
    |||||||||||| ||||||||||||||||||| ||| |||||    
T  44026668 gatttgaaccccgaaccttacatatattatgcgttgtccata 44026627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 4238814 - 4238778
Alignment:
Q  354 gaaccccaaaccttacatatattatgcattgcccata 390  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  4238814 gaaccccgaaccttacatatattatgcattgtccata 4238778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 44198330 - 44198294
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcatt 383  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  44198330 gggatttaaaccccaaactttacatatattatgcatt 44198294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 3052245 - 3052207
Alignment:
Q  345 ctgggatttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3052245 ctgggatttgaaccccaaaccttacatatattatgcatt 3052207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 13696477 - 13696407
Alignment:
Q  124 aaaacaataattatttattaaacaatacatatttaatgttaaatacataaattcaaatgcaaacttacttt 194  Q
    |||||||||||||||||||| | |||  ||||||||| ||||||||| || ||  ||||||||||||||||    
T  13696477 aaaacaataattatttattagaaaatgtatatttaatattaaatacacaagtttgaatgcaaacttacttt 13696407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 23118057 - 23118087
Alignment:
Q  354 gaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||||||||||||||||||||||||    
T  23118057 gaaccccaaaccttacatatattatgcattg 23118087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 394
Target Start/End: Original strand, 29225116 - 29225162
Alignment:
Q  348 ggatttgaaccccaaaccttacatatattatgcattgcccatattga 394  Q
    ||||| ||||| ||||||||||||||||||| ||||| |||||||||    
T  29225116 ggattcgaacctcaaaccttacatatattatacattgtccatattga 29225162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 19647507 - 19647544
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  19647507 gggatttgaaccccagaccttacatatattatacattg 19647544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 21657401 - 21657434
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||| |||||||||||||||||||||||||    
T  21657401 tttgaacctcaaaccttacatatattatgcattg 21657434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 32559366 - 32559329
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  32559366 gggatttgaaccccagaccttacatattttatgcattg 32559329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 39963551 - 39963518
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||| |||||||||||||||||||||||    
T  39963551 tttgaaccccgaaccttacatatattatgcattg 39963518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 1809102 - 1809070
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcatt 383  Q
    ||||||||||||| |||||||||||||||||||    
T  1809102 tttgaaccccaaatcttacatatattatgcatt 1809070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 7215812 - 7215776
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||| |||||||| |||||||||||||||||||||    
T  7215812 gggattcgaaccccagaccttacatatattatgcatt 7215776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Complemental strand, 11647258 - 11647222
Alignment:
Q  348 ggatttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  11647258 ggattcgaaccccaaaccttgcatatattatgcattg 11647222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Complemental strand, 19248540 - 19248504
Alignment:
Q  348 ggatttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||| || ||||||||||||||||    
T  19248540 ggatttgaaccccaaacattgcatatattatgcattg 19248504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 27679560 - 27679524
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||||||||||| |||||| |||||||||||||||    
T  27679560 gggatttgaaccccgaaccttgcatatattatgcatt 27679524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 29695073 - 29695033
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    |||||||| | ||||||||||||||||||||||| ||||||    
T  29695073 tttgaaccacgaaccttacatatattatgcattgtccatat 29695033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 32923185 - 32923239
Alignment:
Q  330 ttttttattttgtgactgggatttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||| ||||||| ||||| |||||||||| |||||||||||||||||||||||    
T  32923185 tttttttttttgtggctggggtttgaaccccgaaccttacatatattatgcattg 32923239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 48226487 - 48226540
Alignment:
Q  337 ttttgtgactgggatttgaaccccaaaccttacatatattatgcattgcccata 390  Q
    ||||||||| ||||||||||||||| ||||| ||||| |||||||||| |||||    
T  48226487 ttttgtgaccgggatttgaaccccagaccttgcatattttatgcattgtccata 48226540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 390
Target Start/End: Complemental strand, 22411822 - 22411783
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattgcccata 390  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  22411822 tttgaaccccgaaccttacatatattatgcattgtccata 22411783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 160768 - 160734
Alignment:
Q  350 atttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||||| ||||||||||||||||||||||    
T  160768 atttgaaccccagaccttacatatattatgcattg 160734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 1657036 - 1657066
Alignment:
Q  354 gaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||||||||||||||||||||||||    
T  1657036 gaaccccaaaccttacatatattatgcattg 1657066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 21266888 - 21266918
Alignment:
Q  354 gaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||||||||||||||||||||||||    
T  21266888 gaaccccaaaccttacatatattatgcattg 21266918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 38939527 - 38939569
Alignment:
Q  341 gtgactgggatttgaaccccaaaccttacatatattatgcatt 383  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||    
T  38939527 gtgactgagatttgaaccccagaccttatatatattatgcatt 38939569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 45029611 - 45029641
Alignment:
Q  354 gaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||||||||||||||||||||||||    
T  45029611 gaaccccaaaccttacatatattatgcattg 45029641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 4916213 - 4916180
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||| ||||||||||||||||||||    
T  4916213 tttgaaccccaaatcttacatatattatgcattg 4916180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 22164272 - 22164305
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||| ||||||||||||||||||||||    
T  22164272 tttgaaccccagaccttacatatattatgcattg 22164305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 22540795 - 22540848
Alignment:
Q  337 ttttgtgactgggatttgaaccccaaaccttacatatattatgcattgcccata 390  Q
    ||||||| | ||| ||||||||||||||||| |||||||||||| ||| |||||    
T  22540795 ttttgtggccggggtttgaaccccaaaccttccatatattatgcgttgtccata 22540848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 24675068 - 24675105
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  24675068 gggatttgaaccccaaatcttgcatatattatgcattg 24675105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 28435245 - 28435290
Alignment:
Q  345 ctgggatttgaaccccaaaccttacatatattatgcattgcccata 390  Q
    ||||| |||||||||| |||||| |||||||||||||||| |||||    
T  28435245 ctggggtttgaaccccgaaccttgcatatattatgcattgtccata 28435290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 29731381 - 29731418
Alignment:
Q  350 atttgaaccccaaaccttacatatattatgcattgccc 387  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  29731381 atttgaaccccaaacattacatattttatgcattgccc 29731418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 32268139 - 32268106
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||| ||||||||||||||||    
T  32268139 tttgaaccccaaacctttcatatattatgcattg 32268106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 38767037 - 38767070
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||||||||| ||||||||||    
T  38767037 tttgaaccccaaaccttacatatgttatgcattg 38767070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 46434763 - 46434796
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||| |||||||||||||||||||||||||    
T  46434763 tttgaacctcaaaccttacatatattatgcattg 46434796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 8734909 - 8734869
Alignment:
Q  350 atttgaaccccaaaccttacatatattatgcattgcccata 390  Q
    ||||||||| || |||||||||||||||||||||| |||||    
T  8734909 atttgaacctcagaccttacatatattatgcattgtccata 8734869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 9783957 - 9783917
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    |||||||| || |||||||||||||||||||||| ||||||    
T  9783957 tttgaacctcagaccttacatatattatgcattgtccatat 9783917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 383
Target Start/End: Original strand, 18903761 - 18903793
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcatt 383  Q
    ||||||||||| |||||||||||||||||||||    
T  18903761 tttgaaccccagaccttacatatattatgcatt 18903793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 22040708 - 22040668
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    |||||||||| |||||| |||||||||||||||| ||||||    
T  22040708 tttgaaccccgaaccttgcatatattatgcattgtccatat 22040668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 39146720 - 39146660
Alignment:
Q  331 tttttattttgtgactgggatttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    ||||| ||||||| ||||  ||||||| || |||||||| |||||||||||||| ||||||    
T  39146720 ttttttttttgtggctggagtttgaactccgaaccttacttatattatgcattgtccatat 39146660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 39842016 - 39842048
Alignment:
Q  352 ttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||| |||||||||||||||||||||||||    
T  39842016 ttgaacctcaaaccttacatatattatgcattg 39842048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 48159739 - 48159695
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    |||||||||||  | ||||||||||||||||||||||| ||||||    
T  48159739 gggatttgaacttcgaaccttacatatattatgcattgtccatat 48159695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 55517504 - 55517468
Alignment:
Q  125 aaacaataattatttattaaacaatacatatttaatg 161  Q
    |||||| |||||||||||||| |||||||||||||||    
T  55517504 aaacaacaattatttattaaaaaatacatatttaatg 55517468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 10497135 - 10497188
Alignment:
Q  331 tttttattttgtgactgggatttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||| ||||||| |||||||| ||||| |||||||||||||||||||||||||    
T  10497135 ttttttttttgtgtctgggattcgaaccgcaaaccttacatatattatgcattg 10497188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 24623320 - 24623360
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  24623320 tttgaaccccgaaccttacatatattatgcattgtccatat 24623360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 9333986 - 9334016
Alignment:
Q  354 gaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||||||||||||||||||||||||    
T  9333986 gaaccccaaaccttacatatattatgcattg 9334016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 384
Target Start/End: Complemental strand, 9973273 - 9973243
Alignment:
Q  354 gaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||||||||||||||||||||||||    
T  9973273 gaaccccaaaccttacatatattatgcattg 9973243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 1989046 - 1989079
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||| |||||||||||||||||||||||||    
T  1989046 tttgaacctcaaaccttacatatattatgcattg 1989079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 8138461 - 8138494
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||| ||||||||||||||||||||||    
T  8138461 tttgaaccccagaccttacatatattatgcattg 8138494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 379
Target Start/End: Complemental strand, 8311533 - 8311500
Alignment:
Q  346 tgggatttgaaccccaaaccttacatatattatg 379  Q
    ||||||||||||||| ||||||||||||||||||    
T  8311533 tgggatttgaaccccgaaccttacatatattatg 8311500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 15169989 - 15169956
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||| |||||||||||||||||||||||    
T  15169989 tttgaaccccgaaccttacatatattatgcattg 15169956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 15178761 - 15178728
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||| |||||||||||||||||||||||    
T  15178761 tttgaaccccgaaccttacatatattatgcattg 15178728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 6503318 - 6503286
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||||||||||||||||||||||||| ||||    
T  6503318 tttgaaccccaaaccttacatatattatacatt 6503286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 10018457 - 10018425
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||||||| ||||||||||||||||||||||    
T  10018457 tttgaaccccgaaccttacatatattatgcatt 10018425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 383
Target Start/End: Original strand, 12459744 - 12459776
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||||||| ||||||||||||||||||||||    
T  12459744 tttgaaccccgaaccttacatatattatgcatt 12459776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 24212542 - 24212582
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    ||||||||||| || ||||||||||||||||||| ||||||    
T  24212542 tttgaaccccatacattacatatattatgcattgtccatat 24212582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 14623482 - 14623528
Alignment:
Q  345 ctgggatttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    |||| |||||||||||||||||||||||| |||||||||| ||||||    
T  14623482 ctggaatttgaaccccaaaccttacatattttatgcattgtccatat 14623528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 384
Target Start/End: Complemental strand, 34897571 - 34897535
Alignment:
Q  348 ggatttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||| |||||||||||||||||||||||||    
T  34897571 ggatttgaacctcaaaccttacatatattatgcattg 34897535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 45151435 - 45151403
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||||||||||||||||||||||||||||||    
T  45151435 tttgaaccccaaaccttacatatattatgcatt 45151403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 16355589 - 16355544
Alignment:
Q  332 ttttattttgtgactgggatttgaaccccaaaccttacatatattat 378  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||    
T  16355589 ttttttttggtgactgggatttgaacccc-aaccttacatatattat 16355544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 384
Target Start/End: Complemental strand, 38553873 - 38553843
Alignment:
Q  354 gaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||||||||||||||||||||||||    
T  38553873 gaaccccaaaccttacatatattatgcattg 38553843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 8261442 - 8261479
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  8261442 gggattcgaaccccaaaccttacatattttatgcattg 8261479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 25251568 - 25251535
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||||||||||| |||||||||||||||    
T  25251568 tttgaaccccaaaccttatatatattatgcattg 25251535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 34000321 - 34000288
Alignment:
Q  350 atttgaaccccaaaccttacatatattatgcatt 383  Q
    ||||||||||| ||||||||||||||||||||||    
T  34000321 atttgaaccccgaaccttacatatattatgcatt 34000288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 1046618 - 1046582
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||| |||||||| |||||||||||||||||||||    
T  1046618 gggattcgaaccccagaccttacatatattatgcatt 1046582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 383
Target Start/End: Original strand, 23374633 - 23374665
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcatt 383  Q
    ||||||| |||||||||||||||||||||||||    
T  23374633 tttgaactccaaaccttacatatattatgcatt 23374665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Complemental strand, 35666364 - 35666328
Alignment:
Q  348 ggatttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||||||| || |||||||||||||||||||    
T  35666364 ggatttgaaccccagacattacatatattatgcattg 35666328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 48284846 - 48284802
Alignment:
Q  349 gatttgaaccccaaaccttacatatattatgcattg-cccatatt 392  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||||    
T  48284846 gatttaaaccccaaatcttacatatattatgcattgtcccatatt 48284802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 19126677 - 19126719
Alignment:
Q  348 ggatttgaaccccaaaccttacatatattatgcattgcccata 390  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  19126677 ggatttgaaccccaaaccttacatattttatgcattgtccata 19126719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 28965759 - 28965813
Alignment:
Q  330 ttttttattttgtgactgggatttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||| ||| ||||| ||| |||||||||| |||||||||||||||||||||||    
T  28965759 ttttttttttggtgaccggggtttgaaccccgaaccttacatatattatgcattg 28965813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 48376897 - 48376861
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||| ||||||||||||||||||||||||||||||    
T  48376897 gggattcgaaccccaaaccttacatatattatgcatt 48376861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 43630420 - 43630454
Alignment:
Q  350 atttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||| |||||||||||||||||||||||||    
T  43630420 atttgaacctcaaaccttacatatattatgcattg 43630454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 384
Target Start/End: Original strand, 55395322 - 55395360
Alignment:
Q  346 tgggatttgaaccccaaaccttacatatattatgcattg 384  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  55395322 tggggtttgaaccccaaaccttacatatattatgtattg 55395360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 2078298 - 2078265
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||| ||||||||||||||||    
T  2078298 tttgaaccccaaaccttgcatatattatgcattg 2078265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 20612280 - 20612313
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||| ||||||||||||||||    
T  20612280 tttgaaccccaaaccttgcatatattatgcattg 20612313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 21245851 - 21245818
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||| ||||||||||||||||||||||    
T  21245851 tttgaaccccagaccttacatatattatgcattg 21245818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 35392061 - 35392028
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||||||||||||||| ||||    
T  35392061 tttgaaccccaaaccttacatatattatgtattg 35392028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 45334251 - 45334214
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  45334251 gggatttgaaccccgaaccttgcatatattatgcattg 45334214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 383
Target Start/End: Original strand, 47099033 - 47099070
Alignment:
Q  346 tgggatttgaaccccaaaccttacatatattatgcatt 383  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  47099033 tgggatttgaaccccgaaccttgcatatattatgcatt 47099070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 13879941 - 13879878
Alignment:
Q  104 aagtggaaactttttatttgaaaacaataattatttattaaaca-atacatatttaatgttaaat 167  Q
    ||||| |||||||||||| |||||| | |||||||||||||| | ||||||||||||| ||||||    
T  13879941 aagtgaaaactttttatt-gaaaaccacaattatttattaaaaatatacatatttaatattaaat 13879878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 39779087 - 39779043
Alignment:
Q  346 tgggatttgaaccccaaaccttacatatattatgcattgcccata 390  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||    
T  39779087 tggggtttgaaccccgaaccttgcatatattatgcattgtccata 39779043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 52543692 - 52543728
Alignment:
Q  348 ggatttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||||||| || |||||||||||||||||||    
T  52543692 ggatttgaaccccacactttacatatattatgcattg 52543728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 27571848 - 27571885
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  27571848 gggatttgaaccccaaaccttgcatatattatgcattg 27571885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 392
Target Start/End: Original strand, 32115409 - 32115450
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattgcccatatt 392  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  32115409 tttgaaccccgaaccttacatatattatgcattgtccatatt 32115450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 13958873 - 13958837
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||| ||||||||||||||||||||||||||||||    
T  13958873 gggattcgaaccccaaaccttacatatattatgcatt 13958837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 1135393 - 1135430
Alignment:
Q  348 ggatttgaaccccaaaccttacata-tattatgcattg 384  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  1135393 ggatttgaaccccaaaccttacatattattatgcattg 1135430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 1230664 - 1230697
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||| |||||||||||||||||||||||||    
T  1230664 tttgaacctcaaaccttacatatattatgcattg 1230697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 5797276 - 5797313
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  5797276 gggatttgaatcccaaaccttgcatatattatgcattg 5797313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 383
Target Start/End: Original strand, 35149258 - 35149295
Alignment:
Q  346 tgggatttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  35149258 tgggatttgaaccccaaaccttacatattttatacatt 35149295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 41603119 - 41603086
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||| ||||||||||||||||||||||    
T  41603119 tttgaaccccagaccttacatatattatgcattg 41603086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 3650578 - 3650546
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||||||| ||||||||||||||||||||||    
T  3650578 tttgaaccccgaaccttacatatattatgcatt 3650546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 6038278 - 6038318
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    ||||||| ||| |||||||||||||||||||||| ||||||    
T  6038278 tttgaactccagaccttacatatattatgcattgtccatat 6038318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 12714370 - 12714406
Alignment:
Q  348 ggatttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  12714370 ggatttgaaccccgaaccttgcatatattatgcattg 12714406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 26991760 - 26991800
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    |||||||| |||||||| |||||||||||||||| ||||||    
T  26991760 tttgaaccacaaaccttgcatatattatgcattgtccatat 26991800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 28440017 - 28439985
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcatt 383  Q
    ||||||||||| |||||||||||||||||||||    
T  28440017 tttgaaccccagaccttacatatattatgcatt 28439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 28581006 - 28580970
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||||||||||| |||||||||||| |||||||||    
T  28581006 gggatttgaaccccgaaccttacatattttatgcatt 28580970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 33373750 - 33373794
Alignment:
Q  346 tgggatttgaaccccaaaccttacatatattatgcattgcccata 390  Q
    |||| ||||||||||| ||||||||||||||||| |||| |||||    
T  33373750 tggggtttgaaccccagaccttacatatattatgaattgtccata 33373794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 34741789 - 34741713
Alignment:
Q  115 ttttatttgaaaacaataattatttattaaacaa-tacatatttaatgttaaatacataaattcaaatgcaaactta 190  Q
    ||||| ||||||||||||||||||||||||| || || ||||||||| | |||| || || ||| ||| ||||||||    
T  34741789 ttttaattgaaaacaataattatttattaaaaaattatatatttaatataaaatgcacaagttctaatacaaactta 34741713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 3248836 - 3248796
Alignment:
Q  350 atttgaaccccaaaccttacatatattatgcattgcccata 390  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  3248836 atttgaaccctaaaccttacatatattatgcattgtccata 3248796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 11212846 - 11212930
Alignment:
Q  114 tttttatttgaaaacaataattatttattaaa-caatacatatttaatgttaaatacataaattcaaatgcaaacttactttttt 197  Q
    ||||||||  ||||||||||||||||||||||  |||||||||||||| ||||||  |||||||  |||  ||| ||||||||||    
T  11212846 tttttattgaaaaacaataattatttattaaagaaatacatatttaatattaaatgtataaattttaatataaatttactttttt 11212930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 384
Target Start/End: Complemental strand, 34083401 - 34083362
Alignment:
Q  345 ctgggatttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  34083401 ctggggttcgaaccccaaaccttacatatattatgcattg 34083362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 33175321 - 33175279
Alignment:
Q  349 gatttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    |||||||||| || |||||||||||||||||||||| ||||||    
T  33175321 gatttgaacctcataccttacatatattatgcattgtccatat 33175279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 9413860 - 9413823
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  9413860 gggattcgaaccccgaaccttacatatattatgcattg 9413823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 13401655 - 13401622
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||| |||||||||||||||||||||||    
T  13401655 tttgaaccccgaaccttacatatattatgcattg 13401622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 35632958 - 35632917
Alignment:
Q  350 atttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||    
T  35632958 atttgaacctcaaaccttatatatattatgcattgtccatat 35632917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 43356493 - 43356460
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||| ||||||||||||||||||||||||||    
T  43356493 tttgaactccaaaccttacatatattatgcattg 43356460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 46539051 - 46539104
Alignment:
Q  331 tttttattttgtgactgggatttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||| ||||||| | |||||  ||||||||||||||||||||| |||||||||    
T  46539051 ttttttttttgtggccgggatccgaaccccaaaccttacatatactatgcattg 46539104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 380
Target Start/End: Original strand, 49196385 - 49196418
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgc 380  Q
    |||||||||||||||||| |||||||||||||||    
T  49196385 gggatttgaaccccaaactttacatatattatgc 49196418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 379
Target Start/End: Original strand, 15670645 - 15670673
Alignment:
Q  351 tttgaaccccaaaccttacatatattatg 379  Q
    |||||||||||||||||||||||||||||    
T  15670645 tttgaaccccaaaccttacatatattatg 15670673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 34599918 - 34599954
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcatt 383  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  34599918 gggattcgaaccccaaaccttatatatattatgcatt 34599954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 387
Target Start/End: Original strand, 42440151 - 42440187
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattgccc 387  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  42440151 tttgaactccagaccttacatatattatgcattgccc 42440187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 44678017 - 44678053
Alignment:
Q  348 ggatttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  44678017 ggatttgaaccccgaaccttgcatatattatgcattg 44678053  T

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Target: scaffold0066 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 389
Target Start/End: Complemental strand, 17566 - 17524
Alignment:
Q  347 gggatttgaaccccaaaccttacatatattatgcattgcccat 389  Q
    |||||| |||||||||||||| |||||||||||||||| ||||    
T  17566 gggattcgaaccccaaaccttgcatatattatgcattgtccat 17524  T

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Target: scaffold1149 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 2390 - 2357
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    ||||||||||||||||| ||||||||||||||||    
T  2390 tttgaaccccaaaccttgcatatattatgcattg 2357  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 189975 - 190008
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattg 384  Q
    |||||||||| |||||||||||||||||||||||    
T  189975 tttgaaccccgaaccttacatatattatgcattg 190008  T

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Target: scaffold0350 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 1306 - 1266
Alignment:
Q  351 tttgaaccccaaaccttacatatattatgcattgcccatat 391  Q
    ||||||| ||| |||||||||||||||||||||| ||||||    
T  1306 tttgaactccagaccttacatatattatgcattgtccatat 1266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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