View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_high_24 (Length: 417)
Name: NF0493_high_24
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 5893904 - 5893650
Alignment:
| Q |
13 |
tgagatgaatatcatctttgttgtcacaaatggaaagtcacataaaatttcataatattgcaggtgacactacttgcaaatattgcatacacagtaaatt |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5893904 |
tgagatgaatatcatctttgttttcacaaatggaaagtcacataaaatttcataatattgcaggtgacactacttgcaaatattgcatacacagtaaatt |
5893805 |
T |
|
| Q |
113 |
cttaatcttagatttcctagttcttgttcatatttacactttaggggtgctcatttaaatctaaagtttgaaagttgcccctaaatttcattcaatttgc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5893804 |
cttaatcttagatttcctagttcttgttcatatttacactttaggggtgctcatttaaatctatagtttgaaagttgcccctaaatttcattcaatttgc |
5893705 |
T |
|
| Q |
213 |
tgagagaacattgaaagttgtacttgtaccgaataaaaagagtgcaactttcaagctattt |
273 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
5893704 |
tgagagaacattgaaagttgtact------gaataaaaagagtgcaactttcaaactattt |
5893650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 927357 - 927441
Alignment:
| Q |
54 |
ataaaatttcataatattgcaggtgacactacttgcaaatattgcatacacagtaaattcttaatcttagatttcctagttcttgttc |
141 |
Q |
| |
|
||||||||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
927357 |
ataaaatttcataatattgcaagtgacacaagatgcaa---ttgcatacacagtaaattcttaatcttatatttcctagttcttgttc |
927441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 147 times since January 2019
Visitors: 3464