View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_high_36 (Length: 375)
Name: NF0493_high_36
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 30 - 364
Target Start/End: Original strand, 2031760 - 2032094
Alignment:
| Q |
30 |
gtaatcatgttttcgctcccttttttcttttcaagatcgtgataatatttttctggaacaaaaatgttcattgtcatcattcnnnnnnnnnngttcattg |
129 |
Q |
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| T |
2031760 |
gtaatcatgttttcgctcccttttttcttttcaagatcgtgatagtatttttctggaacaaaaatgttcattgtcatcattcaaaaaaaaaggttcattg |
2031859 |
T |
|
| Q |
130 |
tcatctcattcaagaaaaatcttctaannnnnnncttt-aaagacaccacatttttctcaccctcaatataagatattgattttttcaattaattacaag |
228 |
Q |
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| T |
2031860 |
tcatctcattcaagaaaaatcttctaactttttttttttaaagacaccgcatttt-ctcaccctcaatataagatattgattttttcaattaattacaag |
2031958 |
T |
|
| Q |
229 |
atcacgctttgaattaactatagaaaaaccttagttgcatcacagcaaaacaaatccaacaaatcatcacaaaacataaatttcttattaatgatcattt |
328 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2031959 |
atcacactttgaattaactatagaaaaaccttagttgcatcacagcaaaaccaatccaacaaatcatcacaaaacataaatttcttattaatgatcattt |
2032058 |
T |
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| Q |
329 |
tcttcacaaaatcaagttcctcaacaactagttcat |
364 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2032059 |
tcttcacaaaatcaagttcctcaacaactagttcat |
2032094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 29839763 - 29839687
Alignment:
| Q |
281 |
aatccaacaaatcatcacaaaacataaatttcttattaatgatcattttcttcacaaaatcaagttcctcaacaact |
357 |
Q |
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|||||||||||||||||| | |||||||||| ||| ||| | |||||||||||||||||||||||||||||| |
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| T |
29839763 |
aatccaacaaatcatcacgggaggtaaatttctttttagtgaaaaagttcttcacaaaatcaagttcctcaacaact |
29839687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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