View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_high_40 (Length: 354)

Name: NF0493_high_40
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_high_40
NF0493_high_40
[»] chr5 (5 HSPs)
chr5 (1-297)||(25514249-25514545)
chr5 (1-297)||(25520830-25521111)
chr5 (10-233)||(42799862-42800080)
chr5 (169-297)||(42802972-42803098)
chr5 (4-83)||(42803102-42803181)
[»] chr3 (1 HSPs)
chr3 (3-252)||(27906708-27906951)
[»] chr1 (1 HSPs)
chr1 (3-189)||(7387613-7387799)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 25514249 - 25514545
Alignment:
Q  1 cagtagctttctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagc 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||     
T  25514249 cagtagctttctgtttataaattaattagtcaaagcctattttgttgcttttagaattattttgagatatcaaaacactagcaagttctgttatattagt 25514348  T
Q  101 tttcaaatttaaattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgtcgtatggtgtg 200  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25514349 tttcaaatttaaattacatttccaactcatttctgcagcatgtacttgtggctaataatattactagcactttgaaatgtggtttctgtcgtatggtgtg 25514448  T
Q  201 ataagttctgtattcaaatgtattttcccaatcgttgtgataatttctgttaagaactttgcttacaccattgtctatgttcgcaaatgtagtgtta 297  Q
    |||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25514449 ataaattctgtattcaaatgtattttcccaatcattgtgataatctctgttaagaactttgcttacatcattgtctatgttcgcaaatgtagtgtta 25514545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 25521111 - 25520830
Alignment:
Q  1 cagtagctttctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagc 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||     
T  25521111 cagtagctttctgtttataaattaattagtcaaagcctattttgttgcttttagaattattttgagatatcaaaacactagcaagttctgttatattagt 25521012  T
Q  101 tttcaaatttaaattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgtcgtatggtgtg 200  Q
    ||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  25521011 tttcaaatttaaattacatttccaactcatttct---------------ggctaataatattactagcactttgaaatgtgatttctgtcgtatggtgtg 25520927  T
Q  201 ataagttctgtattcaaatgtattttcccaatcgttgtgataatttctgttaagaactttgcttacaccattgtctatgttcgcaaatgtagtgtta 297  Q
    ||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25520926 ataagttatgtattcaaatgtattttcccaatcattgtgataatctctgttaagaactttgcttacatcattgtctatgttcgcaaatgtagtgtta 25520830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 42800080 - 42799862
Alignment:
Q  10 tctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagctttcaaatt 109  Q
    ||||||| | |||||||||||||| || ||| |||||||||||||| |||||||||||||| |||||||||| || |||||||||||||| |||||||||    
T  42800080 tctgtttctgaattaattagtcaaagcttatcttgttgcttttacaatgattttgagatattaaaacactagtaatttctgttatattagttttcaaatt 42799981  T
Q  110 taaattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgtcgtatggtgtgataagttct 209  Q
    || |||||||||||||||||||| |  ||||||||||| ||||   ||||||||||||||||||||||||| ||||||||| ||||||||||||||  |     
T  42799980 tatattacatttccaactcatttgtgcagcatgtacttgtggc---taatattactagcactttgaaatgtggtttctgtcctatggtgtgataag--cg 42799886  T
Q  210 gtattcaaatgtattttcccaatc 233  Q
    ||||||||||||||||||| ||||    
T  42799885 gtattcaaatgtattttccaaatc 42799862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 169 - 297
Target Start/End: Complemental strand, 42803098 - 42802972
Alignment:
Q  169 actttgaaatgtcgtttctgtcgtatggtgtgataagttctgtattcaaatgtattttcccaatcgttgtgataatttctgttaagaactttgcttacac 268  Q
    |||||||||||  ||||||||| |||||||||||||||   |||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||||    
T  42803098 actttgaaatgcggtttctgtcctatggtgtgataagtg--gtattcaaatgtattttcccaatcattatgataagttctgttaagaactttgtttacac 42803001  T
Q  269 cattgtctatgttcgcaaatgtagtgtta 297  Q
    |||||||||||||  ||||||||||||||    
T  42803000 cattgtctatgttttcaaatgtagtgtta 42802972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 42803181 - 42803102
Alignment:
Q  4 tagctttctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagca 83  Q
    ||||||||||||||| |||||||||||| | |||||||||  |||||||||| |||||||||||||||||||||||||||    
T  42803181 tagctttctgtttatgaattaattagtcgaagcctattttaatgcttttacaatgattttgagatatcaaaacactagca 42803102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 3 - 252
Target Start/End: Complemental strand, 27906951 - 27906708
Alignment:
Q  3 gtagctttctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagctt 102  Q
    ||||||||| |||||| |||||||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||    
T  27906951 gtagctttccgtttatgaattaattagtcgaagcctattttgttgcttttacaatgattttgaggtatcaaaacactagcaagttctgttatattagttt 27906852  T
Q  103 tcaaatttaaattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgtcgtatggtgtgat 202  Q
    ||||||||| ||||||||||||||||||||||  ||||||| ||| |||||||||    ||||||||||||||||||| ||||||||| | |||| ||||    
T  27906851 tcaaatttatattacatttccaactcatttctgcagcatgtgcttgtggctaata----tactagcactttgaaatgtggtttctgtcctgtggtatgat 27906756  T
Q  203 aagttctgtattcaaatgtattttcccaatcgttgtgataatttctgtta 252  Q
    ||||   ||||||||||||||||| |||||| ||||||||| ||||||||    
T  27906755 aagt--ggtattcaaatgtattttaccaatcattgtgataagttctgtta 27906708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 7387613 - 7387799
Alignment:
Q  3 gtagctttctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagctt 102  Q
    ||||||||| |||||| |||| ||||||| | ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||||| ||    
T  7387613 gtagctttccgtttatgaattgattagtcgaagcctattttgttgcttttacaatgattttgaggtatcaatacactagcaagttctgctatattagttt 7387712  T
Q  103 tcaaatttaaattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgt 189  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||||||||||| ||||||||    
T  7387713 tcaaatttatattacatttccaactcatttctgcagcatgtacttgtggctaataatagtactagcactttgaaatgtggtttctgt 7387799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 684 times since January 2019
Visitors: 3489