View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_high_47 (Length: 338)
Name: NF0493_high_47
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 119 - 326
Target Start/End: Complemental strand, 2183023 - 2182817
Alignment:
| Q |
119 |
tgatttctcccaattcttctacacagtcaaatgcaatggattgagcattaatattgcaggaataaatcatgatatcttttaacagtttgaaccggaaagt |
218 |
Q |
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| T |
2183023 |
tgatttctcctaattcttttagacagtcaaatgcaatggattgaacatttatattgcaggaataaatcatgaaatctgttaacagcttgaacctaaaagt |
2182924 |
T |
|
| Q |
219 |
tgacacttacttcggttggagtcattgttccgggaatatataaaatttcaccaccttgaacataatccaaaatatcctgataaacaagttcaaacaaaac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||| | |
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| T |
2182923 |
tgacacttacttcggttggagtcattgttccgggaatgtataaaatgtcaccaccttgaacataattcaaaatatcctgataaagaagtt-aaacaaagc |
2182825 |
T |
|
| Q |
319 |
tgcatatt |
326 |
Q |
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|||||||| |
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| T |
2182824 |
tgcatatt |
2182817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 214 - 326
Target Start/End: Complemental strand, 3574441 - 3574330
Alignment:
| Q |
214 |
aaagttgacacttacttcggttggagtcattgttccgggaatatataaaatttcaccaccttgaacataatccaaaatatcctgataaacaagttcaaac |
313 |
Q |
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|||||||| |||| |||| |||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||| |
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| T |
3574441 |
aaagttgaaactttcttcagttggagtcattgtccgggggatatataaaatttcaccaccttgaacatagtccaaaatatattgat-aacaagttaaaac |
3574343 |
T |
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| Q |
314 |
aaaactgcatatt |
326 |
Q |
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|| |||||||||| |
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| T |
3574342 |
aagactgcatatt |
3574330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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