View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_high_58 (Length: 299)

Name: NF0493_high_58
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_high_58
NF0493_high_58
[»] chr4 (2 HSPs)
chr4 (79-117)||(14116379-14116417)
chr4 (80-141)||(16404779-16404840)
[»] chr2 (1 HSPs)
chr2 (83-141)||(35512593-35512651)
[»] chr7 (1 HSPs)
chr7 (79-117)||(4514577-4514615)
[»] chr6 (2 HSPs)
chr6 (79-141)||(14760528-14760590)
chr6 (79-111)||(8863038-8863070)


Alignment Details
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 14116379 - 14116417
Alignment:
Q  79 cctcacacaagaggacttctacaattagagttttacaaa 117  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  14116379 cctcacacaagaggacttctacaattagagtttaacaaa 14116417  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 16404840 - 16404779
Alignment:
Q  80 ctcacacaagaggacttctacaattagagttttacaaaggagtttgtatgcgtttacacttt 141  Q
    |||||||| |||||||| |||||  ||||||||||||| || |||||||| |||||||||||    
T  16404840 ctcacacacgaggacttatacaaacagagttttacaaatgaatttgtatgtgtttacacttt 16404779  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 35512651 - 35512593
Alignment:
Q  83 acacaagaggacttctacaattagagttttacaaaggagtttgtatgcgtttacacttt 141  Q
    ||||||||||||||||||||| | ||||||||||| |||| |||||  |||||||||||    
T  35512651 acacaagaggacttctacaatcatagttttacaaaagagtatgtatatgtttacacttt 35512593  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 4514615 - 4514577
Alignment:
Q  79 cctcacacaagaggacttctacaattagagttttacaaa 117  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  4514615 cctcacacaagaggacttatacaattagagttttgcaaa 4514577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 14760528 - 14760590
Alignment:
Q  79 cctcacacaagaggacttctacaattagagttttacaaaggagtttgtatgcgtttacacttt 141  Q
    |||||||||||||||||| |||||||||||||| | ||| || |||| |||  ||||||||||    
T  14760528 cctcacacaagaggacttatacaattagagtttaataaaagattttgcatgtttttacacttt 14760590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 8863070 - 8863038
Alignment:
Q  79 cctcacacaagaggacttctacaattagagttt 111  Q
    ||||||||||||||||||||||||| |||||||    
T  8863070 cctcacacaagaggacttctacaatcagagttt 8863038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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