View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_high_65 (Length: 283)
Name: NF0493_high_65
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_65 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 52972446 - 52972637
Alignment:
| Q |
4 |
tctaagcaggttttgagagagaggtttaagtgtttcaattccatgtttgaagatatccacaagacgcaaagtagttggatggtgagcgatgaacaacttc |
103 |
Q |
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| T |
52972446 |
tctaagcaggttttgagagagaggtttaagtgtttcaattccatgtttgaagatatccacaagacgcaaagtagttggatggtgagcgatgaacaacttc |
52972545 |
T |
|
| Q |
104 |
aatcagagttaagagtttcaatatctgccttggtcatacctgcgtatcgctcctttatgggaagatttaaacatcatctagaaacaggaaga |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52972546 |
aatcagagttaagagtttcaatatctgccttggtcatacctgcgtatcgctcctttatgggaagatttaaacatcatctagaaacaggaaga |
52972637 |
T |
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