View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_high_67 (Length: 279)
Name: NF0493_high_67
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_67 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 27 - 271
Target Start/End: Original strand, 24182287 - 24182533
Alignment:
| Q |
27 |
tcagattctaccgaacaatttgttatttagtggagtttattaaccacttgaatctaattatttggttaaatttgtcgat--tttgactaaagatcaatca |
124 |
Q |
| |
|
|||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
24182287 |
tcaggttctaccgaacaatttgtcatttaatggagtttattaaccacttgagtctaattatttggttaaatttatcgatcttttgactaaagatcaatca |
24182386 |
T |
|
| Q |
125 |
tcttgctttttggaggcataattgatttctactatttctactgcttgcctcataaccgaaaaatgtgtacactcctagctctacgtaacaaaagaataat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24182387 |
tcttgctttttggaggcataattgatttctactatttctactgcctgcctcataaccgaaaaatgtgtacactcctagctctacgtaacaaaagaataat |
24182486 |
T |
|
| Q |
225 |
acactatcaattcaactcctctcnnnnnnntattatcagttcatctc |
271 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24182487 |
acaccatcaattcaactcctctcaaaaaaatattatcagttcatctc |
24182533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 5529861 - 5529812
Alignment:
| Q |
46 |
ttgttatttagtggagtttattaaccacttgaatctaattatttggttaa |
95 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||||||||||||| ||||| |
|
|
| T |
5529861 |
ttgttatttggtggagctcattaaccacttgaatctaattatttagttaa |
5529812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 38712705 - 38712759
Alignment:
| Q |
40 |
aacaatttgttatttagtggagtttattaaccacttgaatctaattatttggtta |
94 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| || |||||| ||| |||| |
|
|
| T |
38712705 |
aacaatttattatttagtagagtttattaaccacttaaagctaattgtttagtta |
38712759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 29846658 - 29846614
Alignment:
| Q |
50 |
tatttagtggagtttattaaccacttgaatctaattatttggtta |
94 |
Q |
| |
|
||||||||| |||||||||||||||||| | |||||| ||||||| |
|
|
| T |
29846658 |
tatttagtgaagtttattaaccacttgagtttaattacttggtta |
29846614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 456 times since January 2019
Visitors: 3477