View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_high_68 (Length: 279)
Name: NF0493_high_68
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_68 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 1816220 - 1816444
Alignment:
| Q |
1 |
tgtcatgatatgatgagtatgattgattgacagtgtaaaagctattaatttttcttcccaatcatatatctttattagacttacgttaattaagagagcg |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1816220 |
tgtcatgatatgatgattatgattgattgacagtgtaaaagctattaatttttcttcccaatcatatatctttattagacttacgttaattaagagagcg |
1816319 |
T |
|
| Q |
101 |
tgaagtgagtgagttaatgaaaagtaagtgtatgtttgaaatttgtttattaattgattagtggaaaacaagcttaaaagacatttagatagtaagagta |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1816320 |
tgaagtgagtgagctaatgaaaagtaagtgtatgtttgaaatttgtttattaattgattagtggaaaacaagcttaaaagacatttagatagtaagagta |
1816419 |
T |
|
| Q |
201 |
gtagcgtaagtgagtcagttactga |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1816420 |
gtagcgtaagtgagtcagttactga |
1816444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 1816740 - 1816795
Alignment:
| Q |
129 |
tgtatgtttgaaatttgtttattaattgattagtggaaaacaagcttaaaagacat |
184 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
1816740 |
tgtatatttgaattttgtttataaattgattagtacaaaacaagcttaaaagacat |
1816795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 380 times since January 2019
Visitors: 3472