View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_high_71 (Length: 276)
Name: NF0493_high_71
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_71 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 15449824 - 15449989
Alignment:
| Q |
1 |
tcatatcaacccttagaagcttcaggcggtaaagaggtcattgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaacgagg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15449824 |
tcatatcaacccttagaagtttcaggcggtaaatagttcattgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaacgtgg |
15449923 |
T |
|
| Q |
101 |
caaggtttatcaaccatagttgttctcccaatttgtttgctcgaaatgttctttacggtgatgatg |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15449924 |
caaggtttatcaaccatagttgttctcccaatttgtttgctcgaaatgttctttacgatgatgatg |
15449989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 15430306 - 15430472
Alignment:
| Q |
1 |
tcatatcaacccttagaagcttcaggcggtaaagaggtcattgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaacgagg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15430306 |
tcatatcaacccttagaagcttcgggcggtaaagagggcgttgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaacgtgg |
15430405 |
T |
|
| Q |
101 |
caaggtttatcaaccatagttgttctcccaatttgtttgctcgaaatgttctttacggtgatgatgt |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
15430406 |
caaggtttatcaaccatagttgttctcccaatttgtttgttcgaaatgttctttacgatgatgatgt |
15430472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 15488701 - 15488867
Alignment:
| Q |
1 |
tcatatcaacccttagaagcttcaggcggtaaagaggtcattgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaacgagg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15488701 |
tcatatcaacccttagaagcttcgggcggtaaagagggcgttgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaacgtgg |
15488800 |
T |
|
| Q |
101 |
caaggtttatcaaccatagttgttctcccaatttgtttgctcgaaatgttctttacggtgatgatgt |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
15488801 |
caaggtttatcaaccatagttgttctcccaatttgtttgttcgaaatgttctttacgatgatgatgt |
15488867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 16943395 - 16943561
Alignment:
| Q |
1 |
tcatatcaacccttagaagcttcaggcggtaaagaggtcattgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaacgagg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || |
|
|
| T |
16943395 |
tcatatcaacccgtagaagcttcaggcagtaaagaggtcattgatgatcgatgtgatagtggtaggtttaacattgatgccgctaagtatggtaacgtgg |
16943494 |
T |
|
| Q |
101 |
caaggtttatcaaccatagttgttctcccaatttgtttgctcgaaatgttctttacggtgatgatgt |
167 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16943495 |
gaaggtttatcaaccatagttgctctcccaatttgtttgctcgaaatgttctttacgatgatgatgt |
16943561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 22475668 - 22475708
Alignment:
| Q |
99 |
ggcaaggtttatcaaccatagttgttctcccaatttgtttg |
139 |
Q |
| |
|
|||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
22475668 |
ggcaagatttatcaatcatagttgttctcctaatttgtttg |
22475708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 623 times since January 2019
Visitors: 3484