View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_high_72 (Length: 264)
Name: NF0493_high_72
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_72 |
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Alignment Details
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 29686401 - 29686479
Alignment:
| Q |
163 |
tgggaactagactgacaaacacaataattaagttgtaattgaaattcagacacaagaaatttatcaatatagagaatta |
241 |
Q |
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| T |
29686401 |
tgggaactagactgacaaacacaataattaagttgtaattgaaattcagacacaagaaatttatcaatatagagaatta |
29686479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 29686297 - 29686374
Alignment:
| Q |
59 |
aaaagctaccaaccaaatcacagcgtccattaaagaattattatatttagaatcattgtaaagagaacaagaaataaa |
136 |
Q |
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| T |
29686297 |
aaaagctaccaaccaaatcccagcgtccattaaagaattattatatttagaatcattgtaaagagaacaagaaataaa |
29686374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 29680621 - 29680697
Alignment:
| Q |
166 |
gaactagactgacaaacacaataattaagttgtaat-tgaaattcagacacaagaaatttatcaatatagagaatta |
241 |
Q |
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| T |
29680621 |
gaactagactgacaaacacaataattaagtagtaaactgaaattcagacacaagaaattcatcaatatagagaatta |
29680697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 29667254 - 29667335
Alignment:
| Q |
166 |
gaactagactgacaaacacaataat-----taagttgtaat-tgaaattcagacacaagaaatttatcaatatagagaatta |
241 |
Q |
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| T |
29667254 |
gaactagactgacaaacacaataatataattaagtagtaaactgaaattcagacacaagaaattcatcaatatagagaatta |
29667335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 29668865 - 29668919
Alignment:
| Q |
176 |
gacaaacacaataattaagttgtaattgaaattcagacacaagaaatttatcaat |
230 |
Q |
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| T |
29668865 |
gacaaacacaatgattaagtagtaattgaaatccagtcacaagaaatttatcaat |
29668919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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