View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_high_73 (Length: 261)
Name: NF0493_high_73
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_73 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8162101 - 8161881
Alignment:
| Q |
1 |
aattaaagtaagatatttttaccgaaaaagatggatactttaaataaggtatgattcagtacctaaccttgataattgcatcgattacacatctcctcga |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8162101 |
aattaaagtaagatatttttaccaaaaaagatggatactttaaataaggtatgattcagtacctaaccttgataattgcatcgattacacatctcctcga |
8162002 |
T |
|
| Q |
101 |
tggaattaaggagagtgatgtcatgatcaattgcaaggaccttgagaccttctgggaatgatggtttgtcaatgaaaagggtcattgcaattttgtcagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8162001 |
tggaattaaggagagtgatgtcatgatcaattgcaaggacctagagaccttctgggaatgatggtttgtcaatgaaaagggtcattgcaattttgtcagg |
8161902 |
T |
|
| Q |
201 |
aaagaaacggatagtaagttc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8161901 |
aaagaaacggatagtaagttc |
8161881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 7218382 - 7218174
Alignment:
| Q |
5 |
aaagtaagatatttttaccgaaaaagatggatactttaaataaggtatgattcagtacctaaccttgataattgcatcgattacacatctcctcgatgga |
104 |
Q |
| |
|
||||||||| ||||||||| ||||||||| | || || |||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
7218382 |
aaagtaaga-atttttaccaaaaaagatgaaaacattgaataaggtgtgattcagtaactaacccttataattgcatcgattacacatctcctcgatgga |
7218284 |
T |
|
| Q |
105 |
attaaggagagtgatgtcatgatcaattgcaaggaccttgagaccttctgggaatgat---ggtttgtcaatgaaaagggtcattgcaattttgtcagga |
201 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| || |
|
|
| T |
7218283 |
attcaggagagtgatgtcatgatcaattgcaagaaccttgagaccttctgggaatgatgcaggtttgtcggtgaaaagggccattgcaattttgtcaaga |
7218184 |
T |
|
| Q |
202 |
aagaaacgga |
211 |
Q |
| |
|
||| |||||| |
|
|
| T |
7218183 |
aagtaacgga |
7218174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 193
Target Start/End: Complemental strand, 7243808 - 7243678
Alignment:
| Q |
63 |
ctaaccttgataattgcatcgattacacatctcctcgatggaattaaggagagtgatgtcatgatcaattgcaaggaccttgagaccttctgggaatgat |
162 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||| || | ||||| | |||||||||||||||||| |||| ||||||||||| | ||||||||| |
|
|
| T |
7243808 |
ctaaccttgataatggaatcgattacacatatcctcaatagtgttaagaacagtgatgtcatgatcaatagcaataaccttgagaccagcagggaatgat |
7243709 |
T |
|
| Q |
163 |
ggtttgtcaatgaaaagggtcattgcaattt |
193 |
Q |
| |
|
|| ||||||||||||| | ||||||||||| |
|
|
| T |
7243708 |
gggttgtcaatgaaaaaagccattgcaattt |
7243678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 7317778 - 7317876
Alignment:
| Q |
80 |
atcgattacacatctcctcgatggaattaaggagagtgatgtcatgatcaattgcaaggaccttgagaccttctgggaatgatggtttgtcaatgaaaa |
178 |
Q |
| |
|
||||||||||||||||||| || || || |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
7317778 |
atcgattacacatctcctcaatagagttgaggaaagtgatgtcatgatcaattgcaataaccttgagaccggctgggaatgatgggttgtcagtgaaaa |
7317876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 186
Target Start/End: Original strand, 7324538 - 7324666
Alignment:
| Q |
58 |
agtacctaaccttgataattgcatcgattacacatctcctcgatggaattaaggagagtgatgtcatgatcaattgcaaggaccttgagaccttctggga |
157 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| ||||| || | ||||| | | |||||||||||||||| |||| ||| | ||||| | |||| |
|
|
| T |
7324538 |
agtaactaaccttgataatgatatcgattacacatatcctcaatagtgttaagaacaatgatgtcatgatcaatggcaataacccttagaccagcaggga |
7324637 |
T |
|
| Q |
158 |
atgatggtttgtcaatgaaaagggtcatt |
186 |
Q |
| |
|
||||||| ||||||| |||| ||| |||| |
|
|
| T |
7324638 |
atgatgggttgtcaacgaaacgggccatt |
7324666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 22766557 - 22766677
Alignment:
| Q |
58 |
agtacctaaccttgataattgcatcgattacacatctcctcgatggaattaaggagagtgatgtcatgatcaattgcaaggaccttgagaccttctggga |
157 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||| |||| ||||||| |||| |||||||||||||||||| || |||||||| || |||| |
|
|
| T |
22766557 |
agtaactaaccttgataatgacatcgattacacatctcctcaatggtgttaaggaaagtggtgtcatgatcaattgcaataacgttgagaccatcaggga |
22766656 |
T |
|
| Q |
158 |
atgatggtttgtcaatgaaaa |
178 |
Q |
| |
|
||||||| ||||| ||||||| |
|
|
| T |
22766657 |
atgatgggttgtcgatgaaaa |
22766677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 56 times since January 2019
Visitors: 3464