View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_high_76 (Length: 259)
Name: NF0493_high_76
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_76 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 31476631 - 31476402
Alignment:
| Q |
30 |
gagaagatcttccattgacatatacaaatcttcaagcaaggaaagacctatatgaatagaccctgatgtggatgtggatgttccttcccaagccttgagc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31476631 |
gagaagatcttccattgacatatacaaatcttcaagcaaggaaagacctatatgaatagaccctgatgtggatgtggatgttccttcccaagtcttgagc |
31476532 |
T |
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| Q |
130 |
ttgttcaactcttcttctactctaatagtactaggatgagatctagaaggcaaacttattgaacgaacatgatacttgtttaccatggtgcttgctcttt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31476531 |
ttgttcaactcttcttctactctaatagtactaggatgagatcttgaaggcaaactaattgaacgaacatgatacttgtttaccatggtgcttgctcttt |
31476432 |
T |
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| Q |
230 |
tgtttctttttaatatttgaagctcaactt |
259 |
Q |
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| T |
31476431 |
tgtttctttttaatatttgaagctcaactt |
31476402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 31501931 - 31501772
Alignment:
| Q |
100 |
gatgtggatgttccttcccaagccttgagcttgttcaactcttcttctactctaatagtactaggatgagatctagaaggcaaacttattgaacgaacat |
199 |
Q |
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||||| |||||||||||||| | |||||||||||| || || || ||||||||||| || ||||||||||||||||| |||||||| ||||||||||||| |
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| T |
31501931 |
gatgtagatgttccttcccatgtcttgagcttgtttaattcctcatctactctaattgtgctaggatgagatctagatggcaaactaattgaacgaacat |
31501832 |
T |
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| Q |
200 |
gatacttgtttaccatggtgcttgctcttttgtttctttttaatatttgaagctcaactt |
259 |
Q |
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| T |
31501831 |
gatatttgattgccatggtgcttgctcttttgtttctttttaataattgaagctcaactt |
31501772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 31466785 - 31466600
Alignment:
| Q |
30 |
gagaagatcttccattgacatatacaaatcttcaagcaaggaaagacctatatgaatagaccctgatgtggatgtggatgttccttcccaagccttgagc |
129 |
Q |
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|||||||||||||| ||| |||||||| ||||||| |||||||||||| | ||||| || | |||||| |||||||||||||||||||||| ||||||| |
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| T |
31466785 |
gagaagatcttccaatgaaatatacaattcttcaatcaaggaaagacccgtttgaatggagcttgatgtagatgtggatgttccttcccaagtcttgagc |
31466686 |
T |
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| Q |
130 |
ttgttcaactcttcttctactctaatagtactaggatgagatctagaaggcaaacttattgaacgaacatgatacttgtttaccat |
215 |
Q |
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| T |
31466685 |
ttgttcaattcctcatgtactctaattgtgctaggatgaaatctagatggcaaactaattgatcgaacactatacttgtttgccat |
31466600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 210
Target Start/End: Complemental strand, 31472901 - 31472738
Alignment:
| Q |
49 |
atatacaaatcttcaagcaaggaaagacc--tatatgaatagaccctgatgtggatgtggatgttccttcccaagccttgagctt-gttcaactcttctt |
145 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||| |||| ||||||||| ||||||| |||| |
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| T |
31472901 |
atatacaaatcttcaagcaaggaaagaccaatatatgaatagaccctgatgtggatgttgacgttccttggcaagtcttgagctttgttcaacctctctt |
31472802 |
T |
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| Q |
146 |
ctactctaatagtactaggatgagatctagaaggcaaacttattgaacgaacatgatacttgttt |
210 |
Q |
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|||||||||||| |||||| | ||||||||||| ||||| ||||||||| |||| ||||||||| |
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| T |
31472801 |
-tactctaatagtgctaggacgggatctagaaggtaaactaattgaacgagcatggtacttgttt |
31472738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 9292970 - 9293014
Alignment:
| Q |
30 |
gagaagatcttccattgacatatacaaatcttcaagcaaggaaag |
74 |
Q |
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| T |
9292970 |
gagaagatcttccaaagaaatatacaaatcttcaagaaaggaaag |
9293014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 9297577 - 9297621
Alignment:
| Q |
30 |
gagaagatcttccattgacatatacaaatcttcaagcaaggaaag |
74 |
Q |
| |
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|||||||||||||| || ||||||||||||||||| |||||||| |
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| T |
9297577 |
gagaagatcttccaaagaaatatacaaatcttcaagaaaggaaag |
9297621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 9310057 - 9310013
Alignment:
| Q |
30 |
gagaagatcttccattgacatatacaaatcttcaagcaaggaaag |
74 |
Q |
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| T |
9310057 |
gagaagatcttccaaagaaatatacaaatcttcaagaaaggaaag |
9310013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 9332211 - 9332255
Alignment:
| Q |
30 |
gagaagatcttccattgacatatacaaatcttcaagcaaggaaag |
74 |
Q |
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|||||||||||||| || ||||||||||||||||||||| |||| |
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| T |
9332211 |
gagaagatcttccaaggaaatatacaaatcttcaagcaagaaaag |
9332255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 9351939 - 9351983
Alignment:
| Q |
30 |
gagaagatcttccattgacatatacaaatcttcaagcaaggaaag |
74 |
Q |
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| T |
9351939 |
gagaagatcttccaaggaaatatacaaatcttcaagcaagaaaag |
9351983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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