View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_high_82 (Length: 251)
Name: NF0493_high_82
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_82 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 33 - 240
Target Start/End: Complemental strand, 6516912 - 6516705
Alignment:
| Q |
33 |
ttcagcacctaacgttttgaaaggaggcaatgcccactcaacaagttctttcgcataatcaacatcagaaaataaaacttcagaaattggacacaatggt |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6516912 |
ttcagcacctaacgttttgaaaggaggcaatgcccactcaacaagttctttcacataatcaacatcagaaaataaaacttcagaaattggacacaatggt |
6516813 |
T |
|
| Q |
133 |
aaaacatgaacaccaagcatactttcacactcacgaaacggacatggtgcagtccaaacactactctctctcttattagacctcaaaattcccactatcc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6516812 |
aaaacatgaacaccaagcatactttcacactcacgaaacggacatggtgcagtccaaacactactctctctcttattagacctcaaaattcccactatcc |
6516713 |
T |
|
| Q |
233 |
tattctct |
240 |
Q |
| |
|
|||||||| |
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|
| T |
6516712 |
tattctct |
6516705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 6504878 - 6504959
Alignment:
| Q |
52 |
aaaggaggcaatgcccactcaacaagttctttcgcataatcaacatcagaaaataaaacttcagaaattggacacaatggta |
133 |
Q |
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|
|||| |||||||| |||||||||||| ||||| ||||||||||||||||||| ||| |||||||||| ||| |||||||| |
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| T |
6504878 |
aaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggta |
6504959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 6473816 - 6473742
Alignment:
| Q |
59 |
gcaatgcccactcaacaagttctttcgcataatcaacatcagaaaataaaacttcagaaattggacacaatggta |
133 |
Q |
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|||||| |||||| |||||||| ||| ||||||||||||| ||||| |||||||||||||| ||| |||||||| |
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| T |
6473816 |
gcaatgtccactccacaagttccttcacataatcaacatctgaaaacaaaacttcagaaataggaatcaatggta |
6473742 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 13054233 - 13054192
Alignment:
| Q |
93 |
aacatcagaaaataaaacttcagaaattggacacaatggtaa |
134 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
13054233 |
aacatcagaaaataaaacttcagaatttggacacaatggtaa |
13054192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 6464731 - 6464813
Alignment:
| Q |
52 |
aaaggaggcaatgcccactcaacaagttctttcgcataatcaacatcagaaaataaaacttcagaaattggacacaatggtaa |
134 |
Q |
| |
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|||| |||||||| |||||| |||||||| ||| || ||||||||| |||||||| | ||||||||||||| ||||||||| |
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|
| T |
6464731 |
aaagcaggcaatgtccactccacaagttccttcacaaaatcaacatttgaaaataagaattcagaaattggaagcaatggtaa |
6464813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 6462606 - 6462519
Alignment:
| Q |
47 |
ttttgaaaggaggcaatgcccactcaacaagttctttcgcataatcaacatcagaaaataaaacttcagaaattggacacaatggtaa |
134 |
Q |
| |
|
|||| |||| |||||||| ||| |||||||||| ||| |||| ||||||||||| || || ||||||||||| ||| ||||||||| |
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| T |
6462606 |
ttttcaaagcaggcaatgtccattcaacaagttgcttcacatattcaacatcagagaacaatacttcagaaataggaaccaatggtaa |
6462519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 6496066 - 6496153
Alignment:
| Q |
47 |
ttttgaaaggaggcaatgcccactcaacaagttctttcgcataatcaacatcagaaaataaaacttcagaaattggacacaatggtaa |
134 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||| ||| |||| || |||||||| || || ||||||||||| ||| ||||||||| |
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| T |
6496066 |
ttttcaaagcaggcaatgcccattcaacaagttgcttcacatattcgacatcagagaacaatacttcagaaataggaagcaatggtaa |
6496153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 6527634 - 6527689
Alignment:
| Q |
95 |
catcagaaaataaaacttcagaaattggacacaatggtaaaacatgaacaccaagc |
150 |
Q |
| |
|
|||||||||| |||||||||||||| || |||| |||||||| |||||||||||| |
|
|
| T |
6527634 |
catcagaaaacaaaacttcagaaataggcgacaagggtaaaacttgaacaccaagc |
6527689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 13062962 - 13062926
Alignment:
| Q |
93 |
aacatcagaaaataaaacttcagaaattggacacaat |
129 |
Q |
| |
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||||||||||||| ||||||||||| ||||||||||| |
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| T |
13062962 |
aacatcagaaaattaaacttcagaatttggacacaat |
13062926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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