View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_high_84 (Length: 246)
Name: NF0493_high_84
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_84 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 36472017 - 36471809
Alignment:
| Q |
1 |
ttttctgcatctatggctgtagtagaaatttaccttctgaaacgttttccaattccatatggtaagtgcatggataatttt-aatatttgaannnnnnnn |
99 |
Q |
| |
|
||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| |
|
|
| T |
36472017 |
ttttctgcatctatgtctgtggtggaatattaccttctgaaacgttttccaattccatatggtaagtgcatggataaatttgaattttt---------tt |
36471927 |
T |
|
| Q |
100 |
nnctctaaaacatttaatattcaacgtttgattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36471926 |
ttctctaaaacatttaatattcaacgtttgattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtga |
36471827 |
T |
|
| Q |
200 |
gaaagcttattgccttat |
217 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36471826 |
gaaagcttattgccttat |
36471809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 36462688 - 36462582
Alignment:
| Q |
111 |
atttaatattcaacgtttgattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36462688 |
atttaatattcaacgtttgattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttatt |
36462589 |
T |
|
| Q |
211 |
gccttat |
217 |
Q |
| |
|
| ||||| |
|
|
| T |
36462588 |
gtcttat |
36462582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 36462887 - 36462797
Alignment:
| Q |
1 |
ttttctgcatctatggctgtagtagaaatttaccttctgaaacgttttccaattccatatggtaagtgcatggataattttaatatttgaa |
91 |
Q |
| |
|
||||||||||||||| |||| || ||| ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
36462887 |
ttttctgcatctatgtctgtggtggaatattaccttctgaaacgttttcccattccatatggtaagtgtatggataaatttaatatttgaa |
36462797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 710 times since January 2019
Visitors: 3489