View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_high_90 (Length: 222)
Name: NF0493_high_90
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_high_90 |
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Alignment Details
Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 362604 - 362489
Alignment:
| Q |
3 |
tgttcttgctttaaaatcaattcaaatcccaggcattgtgtaataatcagaaccatctnnnnnnncaaagaactagtgggcaatagtgtaaattaaccaa |
102 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
362604 |
tgttcttgctttaaaatcaattcaaatcccagacattgtgtaataatcagaaccatctaaaaaagcaaagaactagtgggcaatagtgtaaattaatcaa |
362505 |
T |
|
| Q |
103 |
taaatcagctcttatt |
118 |
Q |
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|||||||||||||||| |
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| T |
362504 |
taaatcagctcttatt |
362489 |
T |
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