View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_low_1 (Length: 908)

Name: NF0493_low_1
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_low_1
NF0493_low_1
[»] chr4 (7 HSPs)
chr4 (1-844)||(14174247-14175089)
chr4 (1-844)||(28610789-28611623)
chr4 (788-844)||(14179001-14179057)
chr4 (788-844)||(28606805-28606861)
chr4 (789-844)||(11104774-11104829)
chr4 (789-844)||(44161894-44161949)
chr4 (788-845)||(48826701-48826758)
[»] chr8 (3 HSPs)
chr8 (1-844)||(12930985-12931819)
chr8 (789-844)||(12935731-12935786)
chr8 (797-842)||(26504850-26504895)
[»] chr3 (3 HSPs)
chr3 (328-842)||(51302966-51303480)
chr3 (220-715)||(24876227-24876720)
chr3 (49-194)||(24875544-24875688)
[»] chr5 (7 HSPs)
chr5 (1-497)||(38996394-38996890)
chr5 (532-844)||(38996901-38997193)
chr5 (722-841)||(38994631-38994751)
chr5 (429-532)||(38994363-38994466)
chr5 (788-844)||(42910992-42911048)
chr5 (789-842)||(29106878-29106931)
chr5 (568-651)||(38994541-38994624)
[»] chr7 (5 HSPs)
chr7 (767-842)||(15290541-15290616)
chr7 (732-844)||(2757156-2757268)
chr7 (789-842)||(37040426-37040479)
chr7 (789-844)||(12099306-12099361)
chr7 (789-840)||(12084700-12084751)
[»] chr1 (1 HSPs)
chr1 (789-844)||(34907448-34907503)
[»] chr2 (1 HSPs)
chr2 (788-844)||(8539493-8539549)
[»] chr6 (1 HSPs)
chr6 (789-836)||(2100199-2100246)


Alignment Details
Target: chr4 (Bit Score: 780; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 780; E-Value: 0
Query Start/End: Original strand, 1 - 844
Target Start/End: Complemental strand, 14175089 - 14174247
Alignment:
Q  1 gatttgcaatttcttttgatgtgaccttcttcgccgcagtgaaagcacttgaactttcttcgaggttgagattgtgatctgtctttggatttattggatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14175089 gatttgcaatttcttttgatgtgaccttcttcgccgcagtgaaaacacttgaactttcttcgaggttgagattgtgatctgtctttggatttattggatc 14174990  T
Q  101 tccccccgctcttgcttctgcctctgttctccgtgacaagggcctgagagctacttgatcccatgtcttttcttcttgtttcttcattgaacatactatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174989 tccccccgctcttgcttctgcctctgttctccgtgacaagggcctgagagctacttgatcccatgtcttttcttcttgtttcttcattgaacatactatc 14174890  T
Q  201 ttttacctgggacaaagtgagtgctccatctggagcagagttgcttaatgacaccaccaaagtttcccaactttccggcaaagaactcaaaagtaacagt 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||    
T  14174889 ttttacctgggacaaagtgagcgctccatctggagcagagttgcttaatgacaccaccaaagtctcccaactttctggcaaagaactcaaaagtaatagt 14174790  T
Q  301 gcttgtaattcgtcatccagcaccagcttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcggcaactgatcttccctcccgat 400  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  14174789 gcttgtaattcatcatccagcaccaacttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcggcaactgatcttccctctcggt 14174690  T
Q  401 actttaaattcaccaactttctaatagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatgttcttccacagagtctgggcatttgt 500  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174689 actttagattcaccaactttcta-tagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatgttcttccacagagtctgggcatttgt 14174591  T
Q  501 ctctgtggccacatggtggaatacactaagatccacccactgcctaatcagactgacagccttccgatgagactttttccagtcttcatctgtcacctta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  14174590 ctctgtggccacatggtggaatacactaagatccacccactgcctaatcagactgacaaccttccgatgagactttttccagtcttcatccgtcacctta 14174491  T
Q  601 tctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaagtga 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174490 tctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaagtga 14174391  T
Q  701 gtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcga 800  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14174390 gtttaatcatcgtaccagtgttaccagttttctcctccatttaatttacactatactctcaagctccaaccggagctctgataccacttgttgggctcga 14174291  T
Q  801 cgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14174290 cgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 14174247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 1 - 844
Target Start/End: Original strand, 28610789 - 28611623
Alignment:
Q  1 gatttgcaatttcttttgatgtgaccttcttcgccgcagtgaaagcacttgaactttcttcgaggttgagattgtgatctgtctttggatttattggatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28610789 gatttgcaatttcttttgatgtgaccttcttcgccgcagtgaaaacacttgaactttcttcgaggttgagattgtgatctgtctt-ggatttattggatc 28610887  T
Q  101 tccccccgctcttgcttctgcctctgttctccgtgacaagggcctgagagctacttgatcccatgtcttttcttcttgtttcttcattgaacatactatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610888 tccccccgctcttgcttctgcctctgttctccgtgacaagggcctgagagctacttgatcccatgtcttttcttcttgtttcttcattgaacatactatc 28610987  T
Q  201 ttttacctgggacaaagtgagtgctccatctggagcagagttgcttaatgacaccaccaaagtttcccaactttccggcaaagaactcaaaagtaacagt 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||    
T  28610988 ttttacctgggacaaagtgagcgctccatctggagcagagttgcttaatgacaccaccaaagtctcccaactttctggcaaagaactcaaaagtaatagt 28611087  T
Q  301 gcttgtaattcgtcatccagcaccagcttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcggcaactgatcttccctcccgat 400  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611088 gcttgtaattcatcatccagcaccaacttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcggcaactgatcttccctcccgat 28611187  T
Q  401 actttaaattcaccaactttctaatagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatgttcttccacagagtctgggcatttgt 500  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611188 actttagattcaccaactttctaatagcgaaagttttgttttgtgcgttctttctttgatacatcttttcgatgttcttccacagagtctgggcatttgt 28611287  T
Q  501 ctctgtggccacatggtggaatacactaagatccacccactgcctaatcagactgacagccttccgatgagactttttccagtcttcatctgtcacctta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||    
T  28611288 ctctgtggccacatggtggaatacactaagatccacccactgcctaatcagactaacagccttccgatgagactttttccagtcttcatccgtaacctta 28611387  T
Q  601 tctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctcca-tttttggcttccaaatggagtagtttgtagaagtg 699  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28611388 tctggctttgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccattttttggcttccaaatggagtagtttgtagaagtg 28611487  T
Q  700 agtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcg 799  Q
    |||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28611488 agtttaatcatcg---------taccagtgttctcctccatttaatttacactatactctcgagctccaatcggagctctgataccacttgttgggctcg 28611578  T
Q  800 acgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 844  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28611579 acgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 28611623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 788 - 844
Target Start/End: Complemental strand, 14179057 - 14179001
Alignment:
Q  788 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 844  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14179057 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 14179001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 788 - 844
Target Start/End: Original strand, 28606805 - 28606861
Alignment:
Q  788 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 844  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606805 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 28606861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 789 - 844
Target Start/End: Complemental strand, 11104829 - 11104774
Alignment:
Q  789 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104829 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 11104774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 789 - 844
Target Start/End: Complemental strand, 44161949 - 44161894
Alignment:
Q  789 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44161949 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 44161894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 788 - 845
Target Start/End: Original strand, 48826701 - 48826758
Alignment:
Q  788 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagat 845  Q
    |||||||| |||||||||||||||||| |||||||||||||| |||||| ||| ||||    
T  48826701 ttgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaagagat 48826758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 748; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 1 - 844
Target Start/End: Complemental strand, 12931819 - 12930985
Alignment:
Q  1 gatttgcaatttcttttgatgtgaccttcttcgccgcagtgaaagcacttgaactttcttcgaggttgagattgtgatctgtctttggatttattggatc 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12931819 gatttgcaatttcttttgatgtgaccttcttcgttgcagtgaaaacacttgaactttcttcgaggttgagattgtgatctgtctttggatttattggatc 12931720  T
Q  101 tccccccgctcttgcttctgcctctgttctccgtgacaagggcctgagagctacttgatcccatgtcttttcttcttgtttcttcattgaacatactatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12931719 tccccccgctcttgcttctgcctctgttctccgtgacaagggcatgagagctacttgatcccatgtattttcttcttgtttcttcattgaacatactatc 12931620  T
Q  201 ttttacctgggacaaagtgagtgctccatctggagcagagttgcttaatgacaccaccaaagtttcccaactttccggcaaagaactcaaaagtaacagt 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| |||    
T  12931619 ttttacctgggacaaagtgagcgctccatctggagcagagttgcttaatgacaccaccaaagtctcccaactttttggcaaagaactcaaaagtaatagt 12931520  T
Q  301 gcttgtaattcgtcatccagcaccagcttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcggcaactgatcttccctcccgat 400  Q
    ||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12931519 gcttgtaattcatcattcagcaccaacttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcggcaactgatcttccctcccggt 12931420  T
Q  401 actttaaattcaccaactttctaatagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatgttcttccacagagtctgggcatttgt 500  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12931419 actttagattcaccaactttctaatagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatgttcttccacagagtctgggcatttgt 12931320  T
Q  501 ctctgtggccacatggtggaatacactaagatccacccactgcctaatcagactgacagccttccgatgagactttttccagtcttcatctgtcacctta 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12931319 ctctgtggccacatggtggaatacactaagatccacccactgcctaatcagactgacagccttccgatgagactttttccagtcttcatccgtcacctta 12931220  T
Q  601 tctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaagtga 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12931219 tctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaagtga 12931120  T
Q  701 gtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcga 800  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12931119 gtttaatcatcgtaccag---------tgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcga 12931029  T
Q  801 cgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12931028 cgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 12930985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 789 - 844
Target Start/End: Complemental strand, 12935786 - 12935731
Alignment:
Q  789 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 844  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12935786 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaaga 12935731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 797 - 842
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
Q  797 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 842  Q
    |||||||| |||| | ||||||||||||||||| ||||||||||||    
T  26504850 tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa 26504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 328 - 842
Target Start/End: Complemental strand, 51303480 - 51302966
Alignment:
Q  328 ttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcggcaactgatcttccctcccgatactttaaattcaccaactttctaatag 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  51303480 ttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcgacaactgatcttccctcccgatactttaaattcaccaaatttttaatag 51303381  T
Q  428 cgaaagttttgttttgtgcggtctttctttgatacatcttttcgatgttcttccacagagtctgggcatttgtctctgtggccacatggtggaatacact 527  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  51303380 cgaaagttttgttttgtgcgatctttctttgatacatctttttgatgttcttccacagagtctgggcatttgtctctatgaccacatggtggaatacact 51303281  T
Q  528 aagatccacccactgcctaatcagactgacagccttccgatgagactttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctaca 627  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  51303280 aagatccacccgctgcctgatgagactgacagccttccgatgagactttttccagtcttcatttgtcaccttatatggcttagtgtctcccttttctaca 51303181  T
Q  628 ggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaagtgagtttaatcatcgtaccagtgttaccag 727  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  51303180 ggatcatacatatccttgcagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaagtgagtttaatcattgtaccagtgttaccaa 51303081  T
Q  728 tgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaa 827  Q
    ||||||| |||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  51303080 tgttctcttccatttaatttacactataatctcgagctccaactggagctccgataccacttgttgggatcgacgagcttaatgcaagtgtaaattaaaa 51302981  T
Q  828 ttccaaaatccaaaa 842  Q
    || ||||||||||||    
T  51302980 tttcaaaatccaaaa 51302966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 220 - 715
Target Start/End: Original strand, 24876227 - 24876720
Alignment:
Q  220 agtgctccatctggagcagagttgcttaatgacaccaccaaagtttcccaactttccggcaaagaactcaaaagtaacagtgcttgtaattcgtcatcca 319  Q
    |||||||||||||||||| |||||||||| ||||| ||| ||||||||| | |||  |||||||||||||||||||||| || || ||||| | |||| |    
T  24876227 agtgctccatctggagcatagttgcttaacgacactacccaagtttccctattttttggcaaagaactcaaaagtaacaatgattataatttggcatcga 24876326  T
Q  320 gcaccagcttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcggcaactgatcttccctcccgatactttaaattcaccaactt 419  Q
     |||    |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||    
T  24876327 acac----ttcatggcaaccaattggtttagcaagtattgaaagtcactcaagtgcttggcaaccgatcttccctcctgatactttaaattcaccaactt 24876422  T
Q  420 tctaatagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatgttcttccacagagtctgggcatttgtctctgtg-gccacatggtg 518  Q
    |||||||| ||||||||||||||||||||| ||||||||||| || |||||||||||||||||  |||| |||||||| |||| ||||  ||||||||||    
T  24876423 tctaatagtgaaagttttgttttgtgcggtatttctttgatatatattttcgatgttcttccatggagtatgggcattcgtctatgtgccccacatggtg 24876522  T
Q  519 gaatacactaagatccacccactgcctaatcagactgacagccttccgatgagac-tttttccagtcttcatctgtcaccttatctggcttcgtgtctcc 617  Q
    ||||||||||||||||||||||||||||| || ||| ||| ||||||||  | || ||||||||||||||||  || |  |||||||||| |||||||||    
T  24876523 gaatacactaagatccacccactgcctaagcaaactaacaaccttccgacaaaacttttttccagtcttcattcgtaattttatctggctccgtgtctcc 24876622  T
Q  618 cttttctacaggatcatacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaagtgagtttaatcatcgtac 715  Q
    ||||||| ||||||||||  |||| ||| ||||||||||||||||| |||| | |||||||||| |||||||| ||||||||||||||||||||||||    
T  24876623 cttttctgcaggatcatatgtatcattgcagtaaagtatatcctccgttttcgacttccaaatgaagtagtttctagaagtgagtttaatcatcgtac 24876720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 24875544 - 24875688
Alignment:
Q  49 ttgaactttcttcgaggttgagattgtgatctgtctttggatttattggatctccccccgctcttgcttctgcctctgttctccgtgacaagggcctgag 148  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||  | |||||| |||||||||||||| |||||||||  ||  ||||    
T  24875544 ttgaacttttttcgaggttgagactgtaatctgtctttggatttattggatcaccatcagctcttacttctgcctctgttttccgtgacattggtttgag 24875643  T
Q  149 agctacttgatcccatgtcttttcttcttgtttcttcattgaacat 194  Q
    ||||||||||||| |||| |||| ||||| ||||||||| ||||||    
T  24875644 agctacttgatcctatgt-ttttattcttatttcttcatcgaacat 24875688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 9e-88; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 38996394 - 38996890
Alignment:
Q  1 gatttgcaatttcttttgatgtgaccttcttcgccgcagtgaaagcacttgaactttcttcgaggttgagattgtgatctgtctttggatttattggatc 100  Q
    ||||| |||||||||| ||||||| ||||| ||||||||||| | ||||||||| |||||  | ||||||| ||||||   || ||||||||||||||||    
T  38996394 gatttacaatttctttggatgtgatcttctccgccgcagtgataacacttgaacattctttaaagttgagactgtgataaatcattggatttattggatc 38996493  T
Q  101 tccccccgctcttgcttctgcctctgttctccgtgacaagggcctgagagctacttgatcccatgtcttttcttcttgtttcttcattgaacatactatc 200  Q
     | | | |||||| ||| | ||||| || ||| | | |||||| | ||||  ||||||||| ||||||| |||||||| ||||||||| |||||  | ||    
T  38996494 actctctgctcttacttatacctctattttccattagaagggctttagagacacttgatcctatgtcttctcttcttgcttcttcattaaacatgttttc 38996593  T
Q  201 ttttacctgggacaaagtgagtgctccatctggagcagagttgcttaatgacaccaccaaagtttcccaactttccggcaaagaactcaaaagtaacagt 300  Q
    ||| |  || |||||||| ||| || ||||  ||| | |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||| || |    
T  38996594 tttcatttgtgacaaagtcagttcttcatcgagagtatagttgcttaatgacaccaccaaagtttcccaacttttcgtaaaagaactcaaaagtagcaat 38996693  T
Q  301 gcttgtaattcgtcatccagcaccagcttcatggcaaccaattggtttaccaagtcttgaaagtcactcaagtgctcggcaactgatcttccctcccgat 400  Q
    |||||||||| |||||||| ||||| || || | |||||||||||||||||||||||||||||||| ||||||| |   ||||||||||| || ||| ||    
T  38996694 gcttgtaatttgtcatccaacaccaactacaagacaaccaattggtttaccaagtcttgaaagtcaatcaagtgtttaacaactgatctttccccccaat 38996793  T
Q  401 actttaaattcaccaactttctaatagcgaaagttttgttttgtgcggtctttctttgatacatcttttcgatgttcttccacagagtctgggcatt 497  Q
    |||||| | ||||||||||||||||| | | | |||||| |||||  |||||||||||||| |||||||| |||||| |||||| ||| ||| ||||    
T  38996794 actttacaatcaccaactttctaatatcaacaattttgtgttgtggagtctttctttgataaatcttttcaatgttcatccacaaagtttggacatt 38996890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 532 - 844
Target Start/End: Original strand, 38996901 - 38997193
Alignment:
Q  532 tccacccactgcctaatcagactgacagccttccgatgagactttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggat 631  Q
    |||||| ||||||||| |||||||||| |||||  |||||||||||| |||| || ||| ||||| || ||| | ||| || |||||||||||||||| |    
T  38996901 tccaccaactgcctaaccagactgacaaccttcttatgagacttttttcagtttttatcagtcactttgtctag-ttcatgcctcccttttctacagggt 38996999  T
Q  632 catacatatccttgtagtaaagtatatcctccatttttggcttccaaatggagtagtttgtagaagtgagtttaatcatcgtaccagtgttaccagtgtt 731  Q
    ||||||||||| |||  |||| |||||||| |||||| | |||  || || ||||||||||||||||||||| | | |||          ||| ||||||    
T  38997000 catacatatccatgttataaattatatccttcattttcgacttttaactgaagtagtttgtagaagtgagttaagttatc---------atactagtgtt 38997090  T
Q  732 ctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattcc 831  Q
    |||||| ||||||||          |||| |||| |||| |||||||| |||| |||||||||| |||| | |||||| ||  |||||||||||||||||    
T  38997091 ctcctctatttaatt----------tctcaagcttcaactggagctctaatactacttgttgggttcgaagggcttaatgcgggtgtaaattaaaattcc 38997180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 722 - 841
Target Start/End: Original strand, 38994631 - 38994751
Alignment:
Q  722 taccagtgttctcc-tccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaa 820  Q
    |||||||||||||| ||| |||||| ||||  ||| ||||||| | ||||  ||||||||||||||||||||||||| ||||| ||||| || |||||||    
T  38994631 taccagtgttctccctccgtttaatatacataataatctcgagtttcaactagagctctgataccacttgttgggcttgacgatcttaatgctagtgtaa 38994730  T
Q  821 attaaaattccaaaatccaaa 841  Q
    ||||||||||||||| |||||    
T  38994731 attaaaattccaaaacccaaa 38994751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 429 - 532
Target Start/End: Original strand, 38994363 - 38994466
Alignment:
Q  429 gaaagttttgttttgtgcggtctttctttgatacatcttttcgatgttcttccacagagtctgggcatttgtctctgtggccacatggtggaatacacta 528  Q
    |||| |||||||||||||||| |||||||||||||| |||||  ||| |||||||| ||| | ||||||||||||| |||||||||||||||| ||| ||    
T  38994363 gaaaattttgttttgtgcggtatttctttgatacatattttcactgtccttccacaaagtttaggcatttgtctctatggccacatggtggaaaacaata 38994462  T
Q  529 agat 532  Q
    ||||    
T  38994463 agat 38994466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 788 - 844
Target Start/End: Original strand, 42910992 - 42911048
Alignment:
Q  788 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 844  Q
    |||||||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  42910992 ttgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaaga 42911048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 789 - 842
Target Start/End: Original strand, 29106878 - 29106931
Alignment:
Q  789 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 842  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  29106878 tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaa 29106931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 568 - 651
Target Start/End: Original strand, 38994541 - 38994624
Alignment:
Q  568 tgagactttttccagtcttcatctgtcaccttatctggcttcgtgtctcccttttctacaggatcatacatatccttgtagtaa 651  Q
    ||||||| |||  ||||||||||| |||| || |||| |||| |||| |||||||||||| || ||||||||||||||| ||||    
T  38994541 tgagactctttttagtcttcatctatcactttgtctgacttcatgtcccccttttctacatgaacatacatatccttgttgtaa 38994624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 7e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 767 - 842
Target Start/End: Complemental strand, 15290616 - 15290541
Alignment:
Q  767 caaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 842  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  15290616 caaccggagctctgataccacttgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaa 15290541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 732 - 844
Target Start/End: Original strand, 2757156 - 2757268
Alignment:
Q  732 ctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattcc 831  Q
    |||||||||||||||||||||||| ||||||||||||||    ||||| ||| ||||||||| | || |||||||||   ||||||||||||||||||||    
T  2757156 ctcctccatttaatttacactataatctcgagctccaacaaatgctcttatatcacttgttgtgttcaacgagcttattacaagtgtaaattaaaattcc 2757255  T
Q  832 aaaatccaaaaga 844  Q
    ||||| |||||||    
T  2757256 aaaattcaaaaga 2757268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 789 - 842
Target Start/End: Original strand, 37040426 - 37040479
Alignment:
Q  789 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 842  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37040426 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 37040479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 789 - 844
Target Start/End: Complemental strand, 12099361 - 12099306
Alignment:
Q  789 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 844  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  12099361 tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaaga 12099306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 789 - 840
Target Start/End: Complemental strand, 12084751 - 12084700
Alignment:
Q  789 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaa 840  Q
    |||||||||| ||||||||||| | || ||||||||||||| ||||||||||    
T  12084751 tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaa 12084700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 789 - 844
Target Start/End: Complemental strand, 34907503 - 34907448
Alignment:
Q  789 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907503 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 34907448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 788 - 844
Target Start/End: Complemental strand, 8539549 - 8539493
Alignment:
Q  788 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  8539549 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaaga 8539493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 789 - 836
Target Start/End: Original strand, 2100199 - 2100246
Alignment:
Q  789 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaat 836  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  2100199 tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaat 2100246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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