View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_100 (Length: 251)
Name: NF0493_low_100
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_100 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 42190682 - 42190918
Alignment:
| Q |
1 |
tactcatgtatatttttatttatttatatggaagcacatgagacttattagttattacaaacacgtatagattgcatcggttagtacagacagattaaac |
100 |
Q |
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| T |
42190682 |
tactcatgtatatttttatttatttatatggaagcacatgagacttattagttattacaaacacgtatagattgcatcggttagtacag----attaaac |
42190777 |
T |
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| Q |
101 |
atgtatagaaggaatgagaccaacatcacaagccaagatagatggattaattccatgcaattttgataaggcctctcacatgacaaaccaactctcatta |
200 |
Q |
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| T |
42190778 |
atgtatagaaggaatgagaccaacatcacaagccaagatagatggcttaattccatgcaattttgataaggcctctcacatgacaaaccaactctcatta |
42190877 |
T |
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| Q |
201 |
cagcagttatggactcctcaactttatgcatcccatctgtg |
241 |
Q |
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| T |
42190878 |
cagcagttatggactcctcaactttatgcatcccatctgtg |
42190918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 42209267 - 42209360
Alignment:
| Q |
90 |
acagattaaacatgtatagaaggaatgagaccaacatcacaagccaag-atagatggattaattccatgcaattttgataaggcctctcacatg |
182 |
Q |
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| T |
42209267 |
acagattatacaagtatagcaggcatcagaccaacatcacaagcctagtatagactgcttaattccatgcaattttgataaggcttctctcatg |
42209360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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