View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_low_11 (Length: 509)

Name: NF0493_low_11
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_low_11
NF0493_low_11
[»] chr1 (14 HSPs)
chr1 (29-484)||(25266301-25266766)
chr1 (308-476)||(26657458-26657626)
chr1 (308-456)||(50047163-50047312)
chr1 (337-456)||(30675496-30675615)
chr1 (308-456)||(11769978-11770127)
chr1 (308-453)||(8247644-8247790)
chr1 (308-439)||(12423915-12424047)
chr1 (332-400)||(12810329-12810397)
chr1 (308-399)||(21451857-21451948)
chr1 (366-476)||(25727874-25727983)
chr1 (366-476)||(25736282-25736391)
chr1 (337-400)||(34381720-34381783)
chr1 (366-476)||(25730536-25730645)
chr1 (337-398)||(25494521-25494582)
[»] chr5 (17 HSPs)
chr5 (308-456)||(24841735-24841884)
chr5 (313-450)||(18222480-18222618)
chr5 (343-476)||(16634064-16634196)
chr5 (308-456)||(25594676-25594825)
chr5 (308-450)||(12340004-12340147)
chr5 (343-453)||(15205661-15205771)
chr5 (308-400)||(24517336-24517429)
chr5 (306-384)||(17382091-17382170)
chr5 (332-452)||(26330055-26330176)
chr5 (326-383)||(11274387-11274445)
chr5 (348-400)||(25680619-25680671)
chr5 (343-400)||(7742909-7742966)
chr5 (344-400)||(24268574-24268630)
chr5 (344-400)||(24345203-24345259)
chr5 (345-400)||(20694660-20694715)
chr5 (413-457)||(11997877-11997921)
chr5 (420-456)||(22754989-22755025)
[»] chr3 (13 HSPs)
chr3 (332-456)||(13911272-13911396)
chr3 (362-452)||(2729606-2729696)
chr3 (343-389)||(18065834-18065880)
chr3 (343-400)||(12409476-12409533)
chr3 (308-400)||(33914602-33914695)
chr3 (362-456)||(27415208-27415299)
chr3 (326-400)||(1475320-1475394)
chr3 (362-453)||(25883140-25883231)
chr3 (347-456)||(11474868-11474977)
chr3 (308-456)||(21017859-21018008)
chr3 (337-400)||(8402590-8402653)
chr3 (363-400)||(4780727-4780764)
chr3 (362-451)||(4775696-4775785)
[»] chr8 (13 HSPs)
chr8 (308-453)||(13081924-13082070)
chr8 (308-453)||(29047306-29047449)
chr8 (308-476)||(16052242-16052410)
chr8 (308-399)||(28901381-28901473)
chr8 (308-400)||(14977146-14977240)
chr8 (308-400)||(12956471-12956564)
chr8 (308-453)||(16054276-16054422)
chr8 (312-456)||(32239273-32239418)
chr8 (334-400)||(28902098-28902164)
chr8 (362-452)||(5570129-5570219)
chr8 (308-387)||(6358680-6358760)
chr8 (363-400)||(35135462-35135499)
chr8 (368-400)||(24584764-24584796)
[»] chr7 (11 HSPs)
chr7 (308-453)||(22067791-22067939)
chr7 (332-448)||(1255205-1255321)
chr7 (308-400)||(29544501-29544594)
chr7 (343-476)||(7142116-7142248)
chr7 (309-452)||(7815306-7815450)
chr7 (342-396)||(21545843-21545897)
chr7 (312-400)||(23124886-23124975)
chr7 (334-389)||(9066141-9066196)
chr7 (326-400)||(315186-315260)
chr7 (337-476)||(20470775-20470913)
chr7 (308-391)||(20446221-20446305)
[»] chr4 (13 HSPs)
chr4 (309-400)||(27302761-27302853)
chr4 (326-476)||(25315196-25315345)
chr4 (332-400)||(47024796-47024864)
chr4 (337-400)||(10576465-10576528)
chr4 (308-392)||(5906768-5906853)
chr4 (308-400)||(12111371-12111463)
chr4 (362-474)||(15192240-15192351)
chr4 (308-476)||(34864260-34864424)
chr4 (312-400)||(1676335-1676424)
chr4 (312-400)||(1682863-1682952)
chr4 (327-400)||(9783023-9783096)
chr4 (308-399)||(18897973-18898065)
chr4 (361-456)||(10320203-10320298)
[»] chr2 (12 HSPs)
chr2 (308-453)||(21505126-21505272)
chr2 (308-452)||(30998753-30998898)
chr2 (326-450)||(35031703-35031827)
chr2 (306-452)||(16593738-16593887)
chr2 (308-453)||(35707785-35707931)
chr2 (337-400)||(24047394-24047457)
chr2 (312-453)||(25474023-25474165)
chr2 (306-400)||(1733080-1733175)
chr2 (413-476)||(27417228-27417290)
chr2 (337-398)||(21843044-21843105)
chr2 (337-398)||(21844671-21844732)
chr2 (346-398)||(32276555-32276607)
[»] chr6 (6 HSPs)
chr6 (331-456)||(17860432-17860557)
chr6 (326-400)||(13759491-13759565)
chr6 (326-400)||(30355327-30355400)
chr6 (314-437)||(16527878-16528002)
chr6 (413-453)||(15998599-15998639)
chr6 (136-193)||(22609481-22609538)
[»] scaffold0171 (1 HSPs)
scaffold0171 (366-474)||(21438-21545)
[»] scaffold0065 (1 HSPs)
scaffold0065 (413-476)||(12332-12394)
[»] scaffold0282 (1 HSPs)
scaffold0282 (362-392)||(22593-22623)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 29 - 484
Target Start/End: Complemental strand, 25266766 - 25266301
Alignment:
Q  29 aaaaattacatattattttaaaggtttaatagttcaaattaactttatatatatacacaaaatctaaaaaataacatgacggaattacaactgttccatc 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||    
T  25266766 aaaaattacatattattttaaaggtttaatagttcaaattaactttatatata--cacaaaatctaaaaaataacatgacggaattacaaccgttccatc 25266669  T
Q  129 ttaaaaatgttggttttgaatttccgaactattatatccggattttcaaagcctattttaaaaaagaagnnnnnnnnnatttactgaagctataattgga 228  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||         || |||| ||||||||| |||     
T  25266668 ttaaaaatgttggttttaaatttccaaactattatatccggattttcaaagcctattttaaaaaagaag-ttttttttatctacttaagctataactggg 25266570  T
Q  229 ttgagtcacgatcaaatcactctctttaaaacatttcatggtactgatgacatagcatatgacattttttggttatgtt-------------tttgcatt 315  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||             ||||||||    
T  25266569 ttgagtcacgatcagatcactctctttaaaacatttcaaggtactgatgacatagcatatgacattttttggttatgtttttagtacttttctttgcatt 25266470  T
Q  316 tgaagacagaaagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatc 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||    
T  25266469 tgaagacagaaagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcatttttatcttggatc 25266370  T
Q  416 atggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatcgtgacatc 484  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  25266369 atggaacttcatatgtgttttgagtgttttgtagtgagaaaagcatccaaatcgactaatcgtgacatc 25266301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 308 - 476
Target Start/End: Original strand, 26657458 - 26657626
Alignment:
Q  308 tttgcatttgaagacagaaa-gataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||||||| | | | | |||||||||| ||||||||||||| |||  || ||| |||||||||||||||||| || ||||||||||          
T  26657458 tttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggtttgaggaatataatgtattgttttcactcgattcgttgtaattcactttta 26657557  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 476  Q
     ||| ||||| | |||| |||| ||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  26657558 tcctagatcacgcaactccataggtgttttgagtgttttgtagtga-aaaatcatgtaaatcgacaaatc 26657626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 308 - 456
Target Start/End: Original strand, 50047163 - 50047312
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||||||| | ||||| | |  ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||||||          
T  50047163 tttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgtattgttttcactcgagtcatggtaattcactttta 50047262  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 456  Q
     |||  |||||  |||| ||||| ||||||||||||||||||| ||||||    
T  50047263 tcctaaatcatacaactccatatatgttttgagtgttttgtagcgagaaa 50047312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 337 - 456
Target Start/End: Original strand, 30675496 - 30675615
Alignment:
Q  337 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgtttt 436  Q
    ||||| ||||||||||||| |||  |||||||||||||||||||||||||||| ||||||| ||       |||  |||||| |||| |||| |||||||    
T  30675496 tagaggagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaatacacttttgtcctatatcatgcaactccataggtgtttt 30675595  T
Q  437 gagtgttttgtagtgagaaa 456  Q
    ||||||||| ||||||||||    
T  30675596 gagtgttttatagtgagaaa 30675615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 308 - 456
Target Start/End: Complemental strand, 11770127 - 11769978
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||||| | | ||||| |||| ||||||| ||||||||||| | |  |||||||||||||||||||||||| ||| ||||||||||          
T  11770127 tttgcatttgaagataaataagatgagagttagagaatttgtcaatggtttaaggaacatattgtattgttttcactcgtgtcgttgtaattcactttta 11770028  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 456  Q
     |||  |||||| ||||||||  |||| |||||||||||| |||||||||    
T  11770027 tcctaaatcatgaaacttcatgggtgtgttgagtgttttgcagtgagaaa 11769978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 308 - 453
Target Start/End: Complemental strand, 8247790 - 8247644
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||||||| | ||||| |||| ||||| || | |||||||| |||  |||||||| |||| |||||||| ||||||||||||||            
T  8247790 tttgcatttgaagacaaataagatgagagttagaggagatatcaatggtttgaggaacatattttattattttcacttgagtcattgtaattttgtttta 8247691  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 453  Q
     ||| ||||||| |||| |||| ||||||||||||||||||||||||    
T  8247690 ccctagatcatgcaactccataggtgttttgagtgttttgtagtgag 8247644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 308 - 439
Target Start/End: Complemental strand, 12424047 - 12423915
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||||||| | ||||| ||||| ||||  ||||| |||||| |||  |||||||  ||||||||||||||||||||||||||||||          
T  12424047 tttgcatttgaagacaaataagatgagagacagaggcgttgttaatggtttgaggaacatatgatattgttttcactcgagtcattgtaattcagtttta 12423948  T
Q  407 ncctggatcatggaacttcatatgtgttttgag 439  Q
     | | ||||||| |||| |||||||||||||||    
T  12423947 tcttagatcatgcaactccatatgtgttttgag 12423915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 332 - 400
Target Start/End: Original strand, 12810329 - 12810397
Alignment:
Q  332 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||||||||| ||||||||||||| |||  |||||||||||||||||||| || |||| ||||||||||    
T  12810329 agagatagaggagttgtcaatggtttgaggaacatattgtattgttttcattcaagtcgttgtaattca 12810397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 308 - 399
Target Start/End: Complemental strand, 21451948 - 21451857
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattc 399  Q
    |||||||||||||||| | ||||| |||||||||  ||||||||||||||| |  ||||||||||||| ||||||||||| ||||| ||||||    
T  21451948 tttgcatttgaagacaaataagatgagagatagaagagttgtcaatggtat-aggaacatattgtattattttcactcgactcattataattc 21451857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 476
Target Start/End: Complemental strand, 25727983 - 25727874
Alignment:
Q  366 tattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaa 465  Q
    ||||||||||||||||||| | || ||||||||||       |||  |||||| ||||  ||| |||||||||||||||||||||||| ||| ||| |||    
T  25727983 tattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgag-aaatcatgtaa 25727885  T
Q  466 atcgacaaatc 476  Q
    |||||||||||    
T  25727884 atcgacaaatc 25727874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 476
Target Start/End: Complemental strand, 25736391 - 25736282
Alignment:
Q  366 tattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaa 465  Q
    ||||||||||||||||||| | || ||||||||||       |||  |||||| ||||  ||| |||||||||||||||||||||||| ||| ||| |||    
T  25736391 tattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgag-aaatcatgtaa 25736293  T
Q  466 atcgacaaatc 476  Q
    |||||||||||    
T  25736292 atcgacaaatc 25736282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 34381720 - 34381783
Alignment:
Q  337 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||| |||||| |||||| |||| |||||||| ||||||||||| ||||||| ||||||||||    
T  34381720 tagaggagttgttaatggtttgaagaacatattatattgttttcattcgagtcgttgtaattca 34381783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 476
Target Start/End: Complemental strand, 25730645 - 25730536
Alignment:
Q  366 tattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaa 465  Q
    |||||||||||||||| || | |||||| ||||||       |||  |||||| ||||||| | |||||||||||||||||||| ||| ||| ||| |||    
T  25730645 tattgtattgttttcattcaaatcattgaaattcaattttatcctaaatcatgcaacttcacaggtgttttgagtgttttgtagcgag-aaatcatgtaa 25730547  T
Q  466 atcgacaaatc 476  Q
    |||||||||||    
T  25730546 atcgacaaatc 25730536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 25494582 - 25494521
Alignment:
Q  337 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaatt 398  Q
    ||||| ||||||||||||| |||  |||||||||| |||||||| || ||||| ||||||||    
T  25494582 tagaggagttgtcaatggtttgaggaacatattgtcttgttttctcttgagtccttgtaatt 25494521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 308 - 456
Target Start/End: Original strand, 24841735 - 24841884
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||||||| | ||| | |||||||||| |||| |||||||| |||  |||||||||||||||||||||||||||| |||||| |||          
T  24841735 tttgcatttgaagacaaataagtttagagatagaggagttttcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaagtcactttta 24841834  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 456  Q
     ||| |||||||||||| |||| ||||||| |||||||||||||||||||    
T  24841835 tcctagatcatggaactccataggtgtttttagtgttttgtagtgagaaa 24841884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 450
Target Start/End: Original strand, 18222480 - 18222618
Alignment:
Q  313 atttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctg 411  Q
    ||||||||||| | ||||| |||| ||||  ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||       |||     
T  18222480 atttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaacatattgtattgttttaactcgagtcattgtaattcacttttatccta 18222579  T
Q  412 gatcatggaacttcatatgtgttttgagtgttttgtagt 450  Q
     |||||| || | |||| |||||||||||||||| ||||    
T  18222580 aatcatgcaaatccataggtgttttgagtgttttatagt 18222618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 343 - 476
Target Start/End: Original strand, 16634064 - 16634196
Alignment:
Q  343 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgt 442  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||        ||  |||||| ||||  ||| ||||||||| |||    
T  16634064 agttgtcaatggtttgagaaacatattgtattgttttcactcgagtcgttgtaattcacttttattctaaatcatgcaactctataggtgttttgaatgt 16634163  T
Q  443 tttgtagtgagaaaaacatctaaatcgacaaatc 476  Q
    |||| |||||| ||| ||| ||||||||||||||    
T  16634164 tttgcagtgag-aaatcatataaatcgacaaatc 16634196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 308 - 456
Target Start/End: Complemental strand, 25594825 - 25594676
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||||||| | ||||| |||| ||||| | || |||||||| |||  |||||||||||||||||||||| ||||  ||||| ||||          
T  25594825 tttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaacatattgtattgttttcactggagttgttgtatttcattttta 25594726  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 456  Q
     |||  || ||| |||||||||||||||||||||||||| ||||||||||    
T  25594725 tcctaaatgatgcaacttcatatgtgttttgagtgttttatagtgagaaa 25594676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 450
Target Start/End: Complemental strand, 12340147 - 12340004
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||||||| | ||| | |||| ||||| ||||||||||||| |||  |||||||| |||| |||||||| | ||||||||||||||          
T  12340147 tttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgaggaacatattatattattttcacttgtgtcattgtaattcagtttta 12340048  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagt 450  Q
      || ||||||| |||||||||||| ||||| ||||||||||||    
T  12340047 tactagatcatgcaacttcatatgtattttgcgtgttttgtagt 12340004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 453
Target Start/End: Original strand, 15205661 - 15205771
Alignment:
Q  343 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgt 442  Q
    |||||||| |||| |||  |||||||||||||||||||||||||||| ||||||||||       ||| ||||||| || | |||| |||||||||||||    
T  15205661 agttgtcagtggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcagttttctcctagatcatgcaattccataggtgttttgagtgt 15205760  T
Q  443 tttgtagtgag 453  Q
    |||| ||||||    
T  15205761 tttgcagtgag 15205771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 24517336 - 24517429
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||||||||||||||| | ||||| |||  ||||| ||||||||||||| |||  ||||||||||||||||||||| |||||| ||||||||||    
T  24517336 tttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtattgttttcacccgagtcgttgtaattca 24517429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 17382170 - 17382091
Alignment:
Q  306 tttttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactc 384  Q
    |||||||||||||||||| | ||||| |||| ||||| ||||||||||||| |||  |||||||||||||||||||||||    
T  17382170 tttttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgttttcactc 17382091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 332 - 452
Target Start/End: Complemental strand, 26330176 - 26330055
Alignment:
Q  332 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtca-ttgtaattcannnnnnncctggatcatggaacttcatatg 430  Q
    |||||| ||| ||||||||||||| | |  || ||||||||||||||||||| ||| || |||||||||        ||| ||||||| ||||||||| |    
T  26330176 agagatggagtagttgtcaatggtctaaggaatatattgtattgttttcacttgagccagttgtaattcccttttatcctagatcatgcaacttcatagg 26330077  T
Q  431 tgttttgagtgttttgtagtga 452  Q
    ||||||||||||||||||||||    
T  26330076 tgttttgagtgttttgtagtga 26330055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 11274445 - 11274387
Alignment:
Q  326 aagataagagatagagaagttgtcaatggtatga-aaaacatattgtattgttttcact 383  Q
    |||||||||||||||  ||||||||||||| ||| ||||||||||||||||||||||||    
T  11274445 aagataagagatagatcagttgtcaatggtttgagaaaacatattgtattgttttcact 11274387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 400
Target Start/End: Original strand, 25680619 - 25680671
Alignment:
Q  348 tcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||||||| |||  |||||||||||||||||||||||||||| ||||||||||    
T  25680619 tcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaattca 25680671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 7742966 - 7742909
Alignment:
Q  343 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||||||||||| |||| ||||| |||||||||||||  ||||||| ||||||||||    
T  7742966 agttgtcaatggtttgaagaacattttgtattgttttcgttcgagtctttgtaattca 7742909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 400
Target Start/End: Original strand, 24268574 - 24268630
Alignment:
Q  344 gttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||||| ||||| |||  ||||| ||||||||||||||||||||||||| |||||||    
T  24268574 gttgtcgatggtttgaggaacatcttgtattgttttcactcgagtcattataattca 24268630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 400
Target Start/End: Original strand, 24345203 - 24345259
Alignment:
Q  344 gttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||||| ||||| |||  ||||| ||||||||||||||||||||||||| |||||||    
T  24345203 gttgtcgatggtttgaggaacatcttgtattgttttcactcgagtcattataattca 24345259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 400
Target Start/End: Original strand, 20694660 - 20694715
Alignment:
Q  345 ttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||||||||| |||  ||| | |||||||||||||| ||||||||||||||||||    
T  20694660 ttgtcaatggtttgaggaactttttgtattgttttcattcgagtcattgtaattca 20694715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 11997921 - 11997877
Alignment:
Q  413 atcatggaacttcatatgtgttttgagtgttttgtagtgagaaaa 457  Q
    |||||| ||||||||| ||||||||||| |||| |||||||||||    
T  11997921 atcatgcaacttcataggtgttttgagttttttttagtgagaaaa 11997877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 456
Target Start/End: Original strand, 22754989 - 22755025
Alignment:
Q  420 aacttcatatgtgttttgagtgttttgtagtgagaaa 456  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  22754989 aacttcataggtgttttgagtgttttgaagtgagaaa 22755025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 332 - 456
Target Start/End: Original strand, 13911272 - 13911396
Alignment:
Q  332 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgt 431  Q
    |||||||||  ||||||||||||| |||  ||||||| |||||||||||||| || |||||||||||||       ||| ||||||| ||||||||||||    
T  13911272 agagatagaagagttgtcaatggtttgaggaacatatggtattgttttcacttgaatcattgtaattcacttttatcctagatcatgcaacttcatatgt 13911371  T
Q  432 gttttgagtgttttgtagtgagaaa 456  Q
    ||||| |||||||||||||||||||    
T  13911372 gtttttagtgttttgtagtgagaaa 13911396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 362 - 452
Target Start/End: Complemental strand, 2729696 - 2729606
Alignment:
Q  362 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtga 452  Q
    |||||||| ||||||||||||||||||| ||||||||||       |||  | |||| |||||||||||||||||||||||||||||||||    
T  2729696 aacatattatattgttttcactcgagtccttgtaattcatttttatcctaaaccatgcaacttcatatgtgttttgagtgttttgtagtga 2729606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 18065834 - 18065880
Alignment:
Q  343 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtc 389  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  18065834 agttgtcaatggtttgagaaacatattgtattgttttcactcgagtc 18065880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 12409476 - 12409533
Alignment:
Q  343 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||||||||||| |||| ||||||||||||| |||||||| ||||| ||||||||||    
T  12409476 agttgtcaatggtttgaagaacatattgtattattttcacttgagtcgttgtaattca 12409533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 400
Target Start/End: Complemental strand, 33914695 - 33914602
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||||||| |||||| | ||||| |||| || || ||||||||| ||| |||  |||||||||||||||||| ||||||||| ||||||||||    
T  33914695 tttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaacatattgtattgtttttactcgagtcgttgtaattca 33914602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 456
Target Start/End: Original strand, 27415208 - 27415299
Alignment:
Q  362 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 456  Q
    ||||||||||||||||||||||||||||   ||||||||       | |  |||||| ||||||||| ||||||||||||||||||||| |||||    
T  27415208 aacatattgtattgttttcactcgagtc---gtaattcacttttatcgtaaatcatgcaacttcataggtgttttgagtgttttgtagtaagaaa 27415299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 400
Target Start/End: Complemental strand, 1475394 - 1475320
Alignment:
Q  326 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||| |||| ||||| |||| |||||||| |||  || |||||||||| |||||||||||||| ||||||||||    
T  1475394 aagatgagagttagaggagttttcaatggtttgaggaatatattgtattattttcactcgagtcgttgtaattca 1475320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 453
Target Start/End: Original strand, 25883140 - 25883231
Alignment:
Q  362 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 453  Q
    |||||||| |||||||||||||||| || ||||||||||       ||| ||| ||| |||| |||| |||||||||||||||| |||||||    
T  25883140 aacatattatattgttttcactcgaatcgttgtaattcagttttatcctagattatgcaactacataggtgttttgagtgttttatagtgag 25883231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 456
Target Start/End: Original strand, 11474868 - 11474977
Alignment:
Q  347 gtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttg 446  Q
    ||||||||| |||  ||| | ||||||| |||||| |||| || ||||||||||       |||  |||||| ||||||||||||||||||||| ||||     
T  11474868 gtcaatggtttgaggaactttttgtattattttcattcgactcgttgtaattcaattttatcctaaatcatgcaacttcatatgtgttttgagtcttttt 11474967  T
Q  447 tagtgagaaa 456  Q
    ||||||||||    
T  11474968 tagtgagaaa 11474977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 456
Target Start/End: Original strand, 21017859 - 21018008
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||||| | | ||||| |||| ||||| ||||| ||||  | |||  |||||||| |||| ||||||  |||||| ||||||||||          
T  21017859 tttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaacatattatattattttcaaccgagtcgttgtaattcagtttta 21017958  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 456  Q
     ||| ||||||| ||||  | ||||||||||||||||||||| |||||||    
T  21017959 tcctagatcatgcaactctaaatgtgttttgagtgttttgtattgagaaa 21018008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 8402653 - 8402590
Alignment:
Q  337 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||| ||||||||||||| |||  ||||  |||||||||||||| ||||||| ||||||||||    
T  8402653 tagaggagttgtcaatggtttgaggaacaatttgtattgttttcattcgagtcgttgtaattca 8402590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 4780764 - 4780727
Alignment:
Q  363 acatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||||||||||||||||||| || |||||||||||||    
T  4780764 acatattgtattgttttcacttgaatcattgtaattca 4780727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 451
Target Start/End: Complemental strand, 4775785 - 4775696
Alignment:
Q  362 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtg 451  Q
    |||||||| ||||||||||||  ||||| ||||||||||       ||| ||||||| |||||||||| | |||| |||| |||||||||    
T  4775785 aacatattttattgttttcacctgagtcgttgtaattcactcttatcctagatcatgcaacttcatatatattttaagtggtttgtagtg 4775696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 308 - 453
Target Start/End: Complemental strand, 13082070 - 13081924
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||||||| | ||||| |||| ||||| ||||||||||| | ||| |||||  ||||| |||||||||||||||  ||||||||||          
T  13082070 tttgcatttgaagacaaataagatgagagttagaggagttgtcaatgatttgagaaacacgttgtagtgttttcactcgagtagttgtaattcagttgta 13081971  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 453  Q
     ||| ||||||| ||||||||| |||||||||| |||||||||||||    
T  13081970 tcctagatcatgcaacttcataggtgttttgagagttttgtagtgag 13081924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 453
Target Start/End: Complemental strand, 29047449 - 29047306
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||| ||| | ||||| |||| ||||| |||||||||||||| |||   || |||||||||||||||||||||||| |||||||||          
T  29047449 tttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggtaggaa---cacattgtattgttttcactcgagtcactgtaattcaatttta 29047353  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 453  Q
       ||||||||| |||| ||||| |||||||||||||||||||||||    
T  29047352 taatggatcatgcaactccatatatgttttgagtgttttgtagtgag 29047306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 308 - 476
Target Start/End: Complemental strand, 16052410 - 16052242
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    ||||||||||| |||| | || || |||| ||||| ||||||||||||| |||| |||||||| || |||||||||||||||| || |||||||          
T  16052410 tttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggtttgaataacatattttaatgttttcactcgagtcgttataattcacattta 16052311  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 476  Q
     | |  |||||| ||||  ||| |||||||||||||||||||||||| ||| |||||||||| |||||||    
T  16052310 ccttaaatcatgcaactcaataggtgttttgagtgttttgtagtgag-aaatcatctaaatcaacaaatc 16052242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 308 - 399
Target Start/End: Complemental strand, 28901473 - 28901381
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattc 399  Q
    |||||||||||| ||| | ||| | |||||||||| ||||||||||||| |||  |||||||||||||||||||||||||||| |||||||||    
T  28901473 tttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaattc 28901381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 400
Target Start/End: Complemental strand, 14977240 - 14977146
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattg-ttttcactcgagtcattgtaattca 400  Q
    ||||||||| |||||| | ||||| |||| ||||| ||||||||||||| |||  |||||||||||||| |||||||||||||||||||||||||    
T  14977240 tttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgtttttcactcgagtcattgtaattca 14977146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 12956471 - 12956564
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||||||||||||| | | ||||| |||| ||||| ||||||||||||| |||  || ||||||||||||||||||||||||||| ||||||||    
T  12956471 tttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtattgttttcactcgagtcatcgtaattca 12956564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 308 - 453
Target Start/End: Original strand, 16054276 - 16054422
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||||||| | |||||||||| ||||| ||||||||||| | | |  ||||| |||||||||||||||||||||  ||||||||||          
T  16054276 tttgcatttgaagacaaataagataagagttagaggagttgtcaatgatttaaggaacattttgtattgttttcactcgagttgttgtaattcattttta 16054375  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 453  Q
     ||| ||||||  |||| ||||  |||||||| ||||||||||||||    
T  16054376 tcctagatcataaaactccatagatgttttgattgttttgtagtgag 16054422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 312 - 456
Target Start/End: Original strand, 32239273 - 32239418
Alignment:
Q  312 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncct 410  Q
    |||||||||| ||| ||||||| |  ||||| ||||||||||||| |||  |||||||||||||||||| ||| ||||| ||| ||||||       | |    
T  32239273 catttgaagatagataagataataattagaggagttgtcaatggtttgagtaacatattgtattgtttttacttgagtcgttgcaattcacttttatctt 32239372  T
Q  411 ggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 456  Q
      |||||| |||| ||||  ||||||||||||||||||||||||||    
T  32239373 aaatcatgcaactccataaatgttttgagtgttttgtagtgagaaa 32239418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 28902098 - 28902164
Alignment:
Q  334 agatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||||||| |||| | |||||| ||| ||||||||||||||||||||| ||||||| ||||||||||    
T  28902098 agatagaggagttattaatggtttgagaaacatattgtattgttttcattcgagtcgttgtaattca 28902164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 452
Target Start/End: Complemental strand, 5570219 - 5570129
Alignment:
Q  362 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtga 452  Q
    |||||||||||||||||||||||||||  ||||||||||       |||  |||||| |||||| || |||||||||||||||| ||||||    
T  5570219 aacatattgtattgttttcactcgagttgttgtaattcacttttatcctatatcatgcaacttcgtaggtgttttgagtgttttctagtga 5570129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 387
Target Start/End: Original strand, 6358680 - 6358760
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgag 387  Q
    |||||||||||||||| | ||| | |||||||||| |||||| |||||| ||  ||||||||||||||||||||| |||||    
T  6358680 tttgcatttgaagacatataagttgagagatagaggagttgttaatggtttgggaaacatattgtattgttttcaatcgag 6358760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 35135499 - 35135462
Alignment:
Q  363 acatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  35135499 acattttgtattgtttttactcgagtcattgtaattca 35135462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 24584796 - 24584764
Alignment:
Q  368 ttgtattgttttcactcgagtcattgtaattca 400  Q
    |||||||||||||| ||||||||||||||||||    
T  24584796 ttgtattgttttcattcgagtcattgtaattca 24584764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 308 - 453
Target Start/End: Complemental strand, 22067939 - 22067791
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||||||| | ||||| |||| || || ||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||          
T  22067939 tttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaacataatgtattgttttcactcgagtcattgtaattcaatttta 22067840  T
Q  407 ncctggatcatggaacttcata--tgtgttttgagtgttttgtagtgag 453  Q
     ||| ||||||| |||| ||||  | | |||||||||||||||||||||    
T  22067839 tcctagatcatgcaactccataggtattttttgagtgttttgtagtgag 22067791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 448
Target Start/End: Complemental strand, 1255321 - 1255205
Alignment:
Q  332 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgt 431  Q
    |||| ||||| ||||||||||||| |||  || | ||||||||||||||||||||||||||||||||||       |||  |||||| ||||||||| ||    
T  1255321 agagttagaggagttgtcaatggtttgaggaataaattgtattgttttcactcgagtcattgtaattcatttttatcctaaatcatgcaacttcataggt 1255222  T
Q  432 gttttgagtgttttgta 448  Q
    |||||||||||||||||    
T  1255221 gttttgagtgttttgta 1255205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 29544501 - 29544594
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||||||||||||||| | ||||| |||| ||||| |||||||||| || |||  |||||||||||||||||||||||||||| ||||||||||    
T  29544501 tttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaacatattgtattgttttcactcgagtcgttgtaattca 29544594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 476
Target Start/End: Original strand, 7142116 - 7142248
Alignment:
Q  343 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgt 442  Q
    ||||||||||||| | |  |||||||| ||||| ||||||||||||| ||||||||||       ||  ||||||| |||| |||| ||||||| |||||    
T  7142116 agttgtcaatggtttaaggaacatattttattgctttcactcgagtcgttgtaattcacttttatccaagatcatgcaactccataggtgttttaagtgt 7142215  T
Q  443 tttgtagtgagaaaaacatctaaatcgacaaatc 476  Q
    ||||||||||| ||| ||| ||||||||||||||    
T  7142216 tttgtagtgag-aaatcatgtaaatcgacaaatc 7142248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 452
Target Start/End: Original strand, 7815306 - 7815450
Alignment:
Q  309 ttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnn 407  Q
    ||||||||||||| | | ||||| |||| || || | ||||||||||| | | |||||||||||||| |||||||||| ||  ||||||||||           
T  7815306 ttgcatttgaagataaataagatgagagttaaaggacttgtcaatggtttaagaaacatattgtatttttttcactcgggtggttgtaattcagttttat 7815405  T
Q  408 cctggatcatggaacttcatatgtgttttgagtgttttgtagtga 452  Q
     ||  |||||| ||||||||| |||||||||||||||||||||||    
T  7815406 tctaaatcatgcaacttcataggtgttttgagtgttttgtagtga 7815450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 21545897 - 21545843
Alignment:
Q  342 aagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaa 396  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||| ||||||    
T  21545897 aagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaa 21545843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 400
Target Start/End: Original strand, 23124886 - 23124975
Alignment:
Q  312 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||||||||||| | ||||| |||  ||||| |||||| | |||| |||  |||||||||||||||||||||||||||| ||||||||||    
T  23124886 catttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaacatattgtattgttttcactcgagtcgttgtaattca 23124975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 389
Target Start/End: Original strand, 9066141 - 9066196
Alignment:
Q  334 agatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtc 389  Q
    |||||||||||||||||||| | | |  ||||||||||||||||||||||||||||    
T  9066141 agatagagaagttgtcaatgtttttaggaacatattgtattgttttcactcgagtc 9066196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 315186 - 315260
Alignment:
Q  326 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||| |||| ||||| ||||||||||||| |||| || |||||||||| || |||||||||| ||||| |||||    
T  315186 aagatgagagttagaggagttgtcaatggtttgaagaatatattgtattattgtcactcgagttattgttattca 315260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 476
Target Start/End: Complemental strand, 20470913 - 20470775
Alignment:
Q  337 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgtttt 436  Q
    ||||| ||||||||||||| |||  |||||||| |||||||||||||  |||| ||||||||||       |||  |||||| | || ||||  ||||||    
T  20470913 tagaggagttgtcaatggtttgaggaacatattatattgttttcacttaagtcgttgtaattcactttcagcctaaatcatgcatctgcatagctgtttt 20470814  T
Q  437 gagtgttttgtagtgagaaaaacatctaaatcgacaaatc 476  Q
    ||||||||| ||||||  ||| ||| ||||||||||||||    
T  20470813 gagtgttttatagtga-taaagcatgtaaatcgacaaatc 20470775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 20446221 - 20446305
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcat 391  Q
    ||||||||||||||||   ||||| |||  ||||| ||||||||||||| | | ||||||||||| ||||||||||| |||||||    
T  20446221 tttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtttcagaaacatattgttttgttttcacttgagtcat 20446305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 400
Target Start/End: Original strand, 27302761 - 27302853
Alignment:
Q  309 ttgcatttgaagacagaaa-gataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||||||||||||| | | ||| | |||||||||||||||||||||| |||  ||||| |||||||||||||||||||||||||||||||||    
T  27302761 ttgcatttgaagacaaatatgatgatagatagagaagttgtcaatggtttgaggaacattttgtattgttttcactcgagtcattgtaattca 27302853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 476
Target Start/End: Complemental strand, 25315345 - 25315196
Alignment:
Q  326 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttc 425  Q
    ||||| |||||||||| ||||||||||| | |||  |||||||||||||||||||||| ||||| |||||||| |       ||| ||||||| |||| |    
T  25315345 aagatgagagatagaggagttgtcaatgctttgaggaacatattgtattgttttcacttgagtcgttgtaattaagttttatcctagatcatgcaactcc 25315246  T
Q  426 atatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 476  Q
    ||||| |||||||||  |||||||||||  || ||| ||||||||||||||    
T  25315245 atatgggttttgagtaatttgtagtgag-gaatcatgtaaatcgacaaatc 25315196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 400
Target Start/End: Complemental strand, 47024864 - 47024796
Alignment:
Q  332 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| | || |||||||    
T  47024864 agagatagagtagttgtcaatggtttgaaaaatatattgtattgttttcactcgagccgttctaattca 47024796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 10576465 - 10576528
Alignment:
Q  337 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||||||||||| ||||| |||| ||||| |||||||||||||| ||||||||||||||||||    
T  10576465 tagagaagttgtccatggtttgaagaacattttgtattgttttcattcgagtcattgtaattca 10576528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 392
Target Start/End: Complemental strand, 5906853 - 5906768
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcatt 392  Q
    |||||||||||||||| | ||||| |||| ||||| | ||||||||||| |||  |||||||| ||||||||||||||||||||||    
T  5906853 tttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaacatattatattgttttcactcgagtcatt 5906768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 400
Target Start/End: Complemental strand, 12111463 - 12111371
Alignment:
Q  308 tttgcatttgaagacagaaagataagagatagagaagttgtcaatggtatgaaaaacatattgta-ttgttttcactcgagtcattgtaattca 400  Q
    |||||||||||||||| |||||| ||| |||||| ||||||||||||| |||  ||||||||||| || ||||||| |||||| ||||||||||    
T  12111463 tttgcatttgaagacaaaaagatgaga-atagaggagttgtcaatggtttgaggaacatattgtattttttttcacacgagtcgttgtaattca 12111371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 15192240 - 15192351
Alignment:
Q  362 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacat 461  Q
    ||||||||||||||||||||||| |||  ||||||||||       ||| |||| || | || |||| |||||||||||||||||||||||| ||| |||    
T  15192240 aacatattgtattgttttcactcaagttgttgtaattcacttttatcctagatcgtgcagctccataggtgttttgagtgttttgtagtgag-aaatcat 15192338  T
Q  462 ctaaatcgacaaa 474  Q
     ||||||||||||    
T  15192339 gtaaatcgacaaa 15192351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 308 - 476
Target Start/End: Complemental strand, 34864424 - 34864260
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||| ||||||||||| | ||||||| || ||||| ||||||||||||| |||  ||| |||  |||||||||||||||  |||||||||||||          
T  34864424 tttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaacgtatcatattgttttcactcg--tcattgtaattcactttta 34864327  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 476  Q
     |||  || ||| |||| |||  |||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  34864326 tcctaaattatgaaactccat--gtgttttgagtgttttgtagtgag-aaatcatgtaaatcgacaaatc 34864260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 400
Target Start/End: Complemental strand, 1676424 - 1676335
Alignment:
Q  312 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||||||||||| | ||||| | |||||||| ||||||||||||| |||  ||||||||||| |||||||| ||||||  ||||||||||    
T  1676424 catttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatattgtaatgttttcattcgagtttttgtaattca 1676335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 400
Target Start/End: Complemental strand, 1682952 - 1682863
Alignment:
Q  312 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||||||||||| | ||||| | |||||||| ||||||||||||| |||  ||||||||||| |||||||| ||||||  ||||||||||    
T  1682952 catttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatattgtaatgttttcattcgagtttttgtaattca 1682863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 400
Target Start/End: Complemental strand, 9783096 - 9783023
Alignment:
Q  327 agataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    |||| |||| ||||| |||||||||| || |||  ||||||||||||||||||||||| | |||||||||||||    
T  9783096 agatgagagttagaggagttgtcaatagtttgaggaacatattgtattgttttcactcaattcattgtaattca 9783023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 18897973 - 18898065
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattc 399  Q
    |||||||||||||||| | ||| | |||||||||  | ||||||||||| | |  |||||||||||||||||||||||||| | |||||||||    
T  18897973 tttgcatttgaagacaaataagttgagagatagatgatttgtcaatggtttaaggaacatattgtattgttttcactcgagccgttgtaattc 18898065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 456
Target Start/End: Complemental strand, 10320298 - 10320203
Alignment:
Q  361 aaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 456  Q
    |||||||||||||| |||||||||||||| ||||||||||       ||| || |||| |||| |||| ||||||| ||  |||||||||||||||    
T  10320298 aaacatattgtattcttttcactcgagtcgttgtaattcacttttatcctagaccatgcaactccataggtgttttaagctttttgtagtgagaaa 10320203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 453
Target Start/End: Complemental strand, 21505272 - 21505126
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||||||||||||||| | ||||| |||| ||||| ||||||||||||| |||  | |||||||||||||||||||||||||| || ||||| |          
T  21505272 tttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtttgaggagcatattgtattgttttcactcgagtctttataatttactttta 21505173  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 453  Q
     |||  |||||| |||||| ||  |||||||||||||||||||||||    
T  21505172 tcctaaatcatgcaacttcttagatgttttgagtgttttgtagtgag 21505126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 308 - 452
Target Start/End: Original strand, 30998753 - 30998898
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    ||||| |||||||||| | ||||| |||| ||||  ||||||||||||| |||  |||||||||||||||||||||| ||||| ||||| ||||          
T  30998753 tttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaacatattgtattgttttcacttgagtcgttgtacttcagtttta 30998852  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtga 452  Q
     ||| ||||||  |||| |||| |||||||||||||||||||||||    
T  30998853 tcctagatcatacaactccataggtgttttgagtgttttgtagtga 30998898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 450
Target Start/End: Original strand, 35031703 - 35031827
Alignment:
Q  326 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttc 425  Q
    ||||| |||||||||| |||||| |||||| |||  |||||||||||||||||||||||||||| |||||| | |       ||| ||||||| || | |    
T  35031703 aagatgagagatagaggagttgttaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaacttacttttatcctagatcatgcaattcc 35031802  T
Q  426 atatgtgttttgagtgttttgtagt 450  Q
    ||| |||||||||||||||||||||    
T  35031803 ataggtgttttgagtgttttgtagt 35031827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 306 - 452
Target Start/End: Complemental strand, 16593887 - 16593738
Alignment:
Q  306 tttttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatga--aaaacatattgtattgttttcactcgagtcattgtaattcann 402  Q
    |||||||||||||||||| | ||||| |||| || || ||||||||||||| |||  || ||||||| ||||||||||||||||||  || |||||||      
T  16593887 tttttgcatttgaagacaaataagattagagttataggagttgtcaatggtttgatgaacacatattatattgttttcactcgagttgttttaattcagt 16593788  T
Q  403 nnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtga 452  Q
         ||| ||||||| |||| |||| ||||| |||||||||||||||||    
T  16593787 tttatcctagatcatgcaactccataggtgttctgagtgttttgtagtga 16593738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 453
Target Start/End: Original strand, 35707785 - 35707931
Alignment:
Q  308 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 406  Q
    |||| ||||||||||| | ||||| |||| ||||||||||||||||||| ||| |||||| |||||||||||||||| || |  ||||||||||          
T  35707785 tttgtatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaacatgttgtattgttttcacttgatttgttgtaattcagtttta 35707884  T
Q  407 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 453  Q
     ||| |||      |||||||| ||||||||||||||||||||||||    
T  35707885 tcctagattgcacgacttcataggtgttttgagtgttttgtagtgag 35707931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 24047394 - 24047457
Alignment:
Q  337 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||||| ||||||||||| | |  ||||| |||||||||||||| ||||||||||||||||||    
T  24047394 tagagaaattgtcaatggtttaaggaacattttgtattgttttcattcgagtcattgtaattca 24047457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 453
Target Start/End: Original strand, 25474023 - 25474165
Alignment:
Q  312 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncct 410  Q
    |||||||||||| | ||||| |||| ||||| |||||||||| || |||  ||||||||| |||| |||||||| || |  |||||||||       |||    
T  25474023 catttgaagacaaataagatgagagttagaggagttgtcaattgtttgaggaacatattgaattggtttcactcaagacgctgtaattcagtattatcct 25474122  T
Q  411 ggatcatggaacttcatatgtgttttgagtgttttgtagtgag 453  Q
     ||||||| |||| || | ||||||||| ||||||||||||||    
T  25474123 agatcatgcaactccaaaggtgttttgactgttttgtagtgag 25474165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 1733080 - 1733175
Alignment:
Q  306 tttttgcatttgaagacagaa-agataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||| |||||||||||| |  |||| |||| ||||| |||||||||||   ||| ||||| ||||||||||||||| | ||||| ||||||||||    
T  1733080 ttttttcatttgaagacaaatgagatgagagttagaggagttgtcaatgagttgagaaacaaattgtattgttttcatttgagtcgttgtaattca 1733175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 476
Target Start/End: Complemental strand, 27417290 - 27417228
Alignment:
Q  413 atcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 476  Q
    |||||| |||| |||| ||||||| |||||||||||||||| ||| ||| ||||||||||||||    
T  27417290 atcatgcaactccataggtgttttaagtgttttgtagtgag-aaatcatgtaaatcgacaaatc 27417228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 21843105 - 21843044
Alignment:
Q  337 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaatt 398  Q
    ||||| ||||| ||||||| | |  ||||| |||||||||||||| ||||||||||||||||    
T  21843105 tagaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatt 21843044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 21844732 - 21844671
Alignment:
Q  337 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaatt 398  Q
    ||||| ||||||||||||| | |  ||||| || ||||||||||| ||||||||||||||||    
T  21844732 tagaggagttgtcaatggttttaggaacatgttatattgttttcattcgagtcattgtaatt 21844671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 398
Target Start/End: Complemental strand, 32276607 - 32276555
Alignment:
Q  346 tgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaatt 398  Q
    |||||||||| |||| ||||| ||| |||||||| | ||||||||||||||||    
T  32276607 tgtcaatggtttgaagaacattttgcattgtttttattcgagtcattgtaatt 32276555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 456
Target Start/End: Complemental strand, 17860557 - 17860432
Alignment:
Q  331 aagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatg 430  Q
    ||||| ||||||| ||||||||||| |||  ||||| ||||||| ||||||||||||||||||| ||| |       | |  |||||| |||| |||| |    
T  17860557 aagagttagagaatttgtcaatggtttgaggaacattttgtattattttcactcgagtcattgtcatttacttttatcttaaatcatgcaactccatacg 17860458  T
Q  431 tgttttgagtgttttgtagtgagaaa 456  Q
    || |||||||||||||||||||||||    
T  17860457 tgctttgagtgttttgtagtgagaaa 17860432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 326 - 400
Target Start/End: Complemental strand, 13759565 - 13759491
Alignment:
Q  326 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||| |||| ||||| ||||||||||||| |||  ||||||||| ||||||||||||||| || ||||||||||    
T  13759565 aagatgagagttagaggagttgtcaatggtttgaggaacatattgaattgttttcactcgaatcgttgtaattca 13759491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 30355327 - 30355400
Alignment:
Q  326 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 400  Q
    ||||| |||| ||||||||||||||||||| ||| |||||||||||||| ||||||||| |||| || |||||||    
T  30355327 aagatgagagttagagaagttgtcaatggtttgataaacatattgtatt-ttttcactcaagtcgttttaattca 30355400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 437
Target Start/End: Original strand, 16527878 - 16528002
Alignment:
Q  314 tttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctgg 412  Q
    |||||||||| | ||||| |||| ||||| |||||||  |||| |||  | |||||| ||||||||||||||||||| ||||||||||       ||| |    
T  16527878 tttgaagacaaataagatgagagttagaggagttgtcggtggtttgagtaccatattatattgttttcactcgagtcgttgtaattcatttttatcctag 16527977  T
Q  413 atcatggaacttcatatgtgttttg 437  Q
    |||||| ||||||||| ||||||||    
T  16527978 atcatgcaacttcataggtgttttg 16528002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 15998599 - 15998639
Alignment:
Q  413 atcatggaacttcatatgtgttttgagtgttttgtagtgag 453  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  15998599 atcatgcaacttcataggtgttttgagtgttttgtagtgag 15998639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 22609481 - 22609538
Alignment:
Q  136 tgttggttttgaatttccgaactattatatccggattttcaaagcctattttaaaaaa 193  Q
    ||||||||||| |||||||||||||| |||  |||||| ||||  |||||||||||||    
T  22609481 tgttggttttggatttccgaactattgtatttggatttccaaattctattttaaaaaa 22609538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 474
Target Start/End: Original strand, 21438 - 21545
Alignment:
Q  366 tattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaa 465  Q
    |||||||||||||||||||||||| ||||||||||       |||  |||||| |||||||||  ||||||| |||||||| ||||||  || ||| |||    
T  21438 tattgtattgttttcactcgagtcgttgtaattcacttttatcctaaatcatgcaacttcataattgttttgggtgttttgcagtgag-gaatcatgtaa 21536  T
Q  466 atcgacaaa 474  Q
    |||||||||    
T  21537 atcgacaaa 21545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 476
Target Start/End: Original strand, 12332 - 12394
Alignment:
Q  413 atcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 476  Q
    |||||| |||| |||| |||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  12332 atcatgcaactccataggtgttttgagtgttttgtagtgag-aaatcatgtaaatcgacaaatc 12394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 392
Target Start/End: Complemental strand, 22623 - 22593
Alignment:
Q  362 aacatattgtattgttttcactcgagtcatt 392  Q
    |||||||||||||||||||||||||||||||    
T  22623 aacatattgtattgttttcactcgagtcatt 22593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 481 times since January 2019
Visitors: 3478