View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_114 (Length: 214)
Name: NF0493_low_114
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_114 |
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Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11196184 - 11196319
Alignment:
| Q |
1 |
aaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccat |
100 |
Q |
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|||||| ||||| |||||| |||||||||| | ||||||||||||||||| |||||| | || |||||| | ||||||||| ||||||||||| ||||| |
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| T |
11196184 |
aaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggattattatttccat |
11196283 |
T |
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| Q |
101 |
aatccccccatgtttctccaatccaagggacaaagg |
136 |
Q |
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| T |
11196284 |
aatccccccatgtttctccaatccaagggacaaagg |
11196319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11155737 - 11155872
Alignment:
| Q |
1 |
aaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccat |
100 |
Q |
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|||||||||||| |||||| |||||||||| | ||||||||||||||||| |||||| | || |||||| | ||||||||| ||||||||| ||| ||| |
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| T |
11155737 |
aaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggattattgtgttcat |
11155836 |
T |
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| Q |
101 |
aatccccccatgtttctccaatccaagggacaaagg |
136 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
11155837 |
aatccccccatgagtctccaatccaagggacaaagg |
11155872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11199180 - 11199315
Alignment:
| Q |
1 |
aaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccat |
100 |
Q |
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|||||||||||| |||||| || ||||||| | ||||||||||||||||| |||||| | || |||||| | ||||||||| ||||||||| ||| ||| |
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| T |
11199180 |
aaacatgaattagaatattcatgtggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggattattgtgttcat |
11199279 |
T |
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| Q |
101 |
aatccccccatgtttctccaatccaagggacaaagg |
136 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
11199280 |
aatccccccatgagtctccaatccaagggacaaagg |
11199315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11160599 - 11160733
Alignment:
| Q |
1 |
aaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccat |
100 |
Q |
| |
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|||||||||||| |||||| |||||||||| | ||||||||||||||||| |||||| | || |||||| | ||||||||| ||||||||| ||| ||| |
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| T |
11160599 |
aaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggattattgtgttcat |
11160698 |
T |
|
| Q |
101 |
aatccccccatgtttctccaatccaagggacaaagg |
136 |
Q |
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||||||||| | |||||||||||||||||||||| |
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| T |
11160699 |
aatcccccc-cgagtctccaatccaagggacaaagg |
11160733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11132455 - 11132590
Alignment:
| Q |
1 |
aaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccat |
100 |
Q |
| |
|
|||||||||| ||||||||| ||||||| | || |||||| |||||||| | ||||||| ||||||||| ||||||||| || || ||| | ||| |
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| T |
11132455 |
aaacatgaatcaaaatattggtttggttatgaagatgtgttgtgaatacttgttccatgctggtaggaattaaggtattcctaggaatcattgttgacat |
11132554 |
T |
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| Q |
101 |
aatccccccatgtttctccaatccaagggacaaagg |
136 |
Q |
| |
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|| |||||||||||||||||||||||||| ||||| |
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| T |
11132555 |
gattcccccatgtttctccaatccaagggataaagg |
11132590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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