View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_115 (Length: 209)
Name: NF0493_low_115
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_115 |
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| [»] chr8 (11 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 30 - 209
Target Start/End: Complemental strand, 36210429 - 36210250
Alignment:
| Q |
30 |
cactaagtgtgagagaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaa |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36210429 |
cactaagtgtgagagaccaaggagaaaatataatcggattatgcgggccaaaaaaaagagtcgagcattctgcacaaacagctataagaagagcagagaa |
36210330 |
T |
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| Q |
130 |
agatcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36210329 |
agatcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggca |
36210250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 36188940 - 36188770
Alignment:
| Q |
38 |
gtgagagaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaaagatcatt |
137 |
Q |
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||||||||| | ||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| ||| ||||||||||| | |
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| T |
36188940 |
gtgagagacaatggagaaaatataatcggattatgcgggccaaaaaaaagagtcgagcgttctgcattaacagctataagaacagctgagaaagatcaat |
36188841 |
T |
|
| Q |
138 |
cgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggc |
208 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188840 |
tgttccaaaagattgtcacaacaactgtaacaaagaagccagacattacaaagattcaaacagaaattggc |
36188770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 199
Target Start/End: Complemental strand, 36197311 - 36197142
Alignment:
| Q |
30 |
cactaagtgtgagagaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaa |
129 |
Q |
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||||||| ||||||||||||||||||||||| || |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||| |||| |
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| T |
36197311 |
cactaagagtgagagaccaaggagaaaatatcattggattatgtgggccagaaaaaagagtcaagcattctgcaaaaacagctataagaagagctgagag |
36197212 |
T |
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| Q |
130 |
agatcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaaca |
199 |
Q |
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|||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36197211 |
agatcaattattccaaaagattgtcacagcaactgtgacaaagaagccagacattacaaagattcaaaca |
36197142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 36215012 - 36214838
Alignment:
| Q |
33 |
taagtgtgagagaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaaaga |
132 |
Q |
| |
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|||| ||||||||||| || ||| ||||||||||||||||||||| |||| ||||||||| | ||||||||||||||||||| |||| ||| |
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| T |
36215012 |
taagagtgagagaccagagataaagtataatcggattatgcgggccagatgaaaaagtcaagcattctgtaaaaacagctataagaagagctgagagaga |
36214913 |
T |
|
| Q |
133 |
tcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattgg |
207 |
Q |
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||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36214912 |
tcaattgttccaaaagattgtcacagcaactgtgacaaagaagccagacattacaaagattcaaacacaaattgg |
36214838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 36213769 - 36213594
Alignment:
| Q |
38 |
gtgagagaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaaagatcatt |
137 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || |||| || ||||| | ||||||||||||||||||| |||| |||||| | |
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| T |
36213769 |
gtgagagaccaaggagaaaatataatcggattatgcggcccggatgaaagagtaaggctttctgtaaaaacagctataagaagagctgagagagatcaat |
36213670 |
T |
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| Q |
138 |
cgttccaaaagattgtcacaa------caactgtgacaaagaagccagacattacaaagattcaaacagaaattgg |
207 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
36213669 |
tgttccaaaagattgtcacagtcacagcaactgtgacaaagaagccagacattacaatgattcaaacacaaattgg |
36213594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 43 - 199
Target Start/End: Complemental strand, 36208329 - 36208173
Alignment:
| Q |
43 |
agaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaaagatcattcgttc |
142 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||| ||||| ||| |||| |||||| | |||| |
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| T |
36208329 |
agaccaaggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacatctagaagaaaagctgagagagatcaattgttc |
36208230 |
T |
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| Q |
143 |
caaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaaca |
199 |
Q |
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||||||||||||||| |||||||||| ||||| |||||||||| |||||||||||| |
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| T |
36208229 |
caaaagattgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaaca |
36208173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 36202870 - 36202693
Alignment:
| Q |
30 |
cactaagtgtgagagaccaaggagaaaatataatcggattatgcgggccnnnnnnnngagtcgagcattctg-cacaaacagctataagaagagcagaga |
128 |
Q |
| |
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||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| || ||||| ||||| | | ||| |||||| | |||| |
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| T |
36202870 |
cactaagagtgagagaccaaggagaaaacataattggattatgcgggccagatgaaagagtcaaggcttctgtcacaacc-gttatgagaagatctgaga |
36202772 |
T |
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| Q |
129 |
aagatcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattgg |
207 |
Q |
| |
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|||||| | |||| |||||||||||||| |||| ||||| |||||||||||||||||| ||||||||||| ||||||| |
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| T |
36202771 |
gagatcaattgttcgaaaagattgtcacagcaaccgtgacgaagaagccagacattacacagattcaaacacaaattgg |
36202693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 43 - 199
Target Start/End: Complemental strand, 36185146 - 36184989
Alignment:
| Q |
43 |
agaccaaggagaaaatataatcggattatgcggg-ccnnnnnnnngagtcgagcattctgcacaaacagctataagaagagcagagaaagatcattcgtt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||| ||||||||| ||||| ||| ||||| ||| |||| |||||| | ||| |
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| T |
36185146 |
agaccaaggagaaaatataatcggattatgcggggccagataaaatagtcaagcattctgttaaaacatctagaagaaaagctgagagagatcaattgtt |
36185047 |
T |
|
| Q |
142 |
ccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaaca |
199 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| |||||||||| |||||||||||| |
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|
| T |
36185046 |
ccaaaagattgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaaca |
36184989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 87 - 199
Target Start/End: Complemental strand, 36201426 - 36201316
Alignment:
| Q |
87 |
gagtcgagcattctgcacaaacagctataagaagagcagagaaagatcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattac |
186 |
Q |
| |
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||||| || |||||| | || |||||||||||||||| |||| ||||| | ||||||||||| ||||||| |||||||||| |||||||||||||||| |
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| T |
36201426 |
gagtcaagtattctgtaaaagcagctataagaagagctgaga--gatcaattgttccaaaagactgtcacagcaactgtgaccaagaagccagacattaa |
36201329 |
T |
|
| Q |
187 |
aaagattcaaaca |
199 |
Q |
| |
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|||||||||||| |
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|
| T |
36201328 |
taagattcaaaca |
36201316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 36199363 - 36199303
Alignment:
| Q |
113 |
ataagaagagcagagaaagatcattcgttccaaaagattgtcacaacaactgtgacaaaga |
173 |
Q |
| |
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||||||||||| |||| |||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
36199363 |
ataagaagagccgagagagatcaattgttccaaaagattgtcacaacaactgtgacaaaga |
36199303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 36183651 - 36183564
Alignment:
| Q |
120 |
gagcagagaaagatcattcgttccaaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattgg |
207 |
Q |
| |
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|||| |||| |||||| | |||||||||||| ||| | ||||||||||| |||||| ||||||||| |||||| |||| ||||||| |
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| T |
36183651 |
gagctgagagagatcaattgttccaaaagatcgtcttagcaactgtgacatagaagcttgacattacatagattcgaacacaaattgg |
36183564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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