View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_12 (Length: 504)
Name: NF0493_low_12
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 28 - 497
Target Start/End: Original strand, 1006738 - 1007187
Alignment:
| Q |
28 |
cacctctctcggccgagatttgaactttggttcgccaagttgtgggagtctaacccctgatggcagttacccacattttagagtattttgttgtaactaa |
127 |
Q |
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| T |
1006738 |
cacctctcttggccgagatttgaactttggttcgccaagttgtgggagtctaacccctgatggtagttacccacattttagagtattttgttgtaactaa |
1006837 |
T |
|
| Q |
128 |
ttaattaatttgatagattagtacaacataaatgcaattgcaatacaaacatt-aactaagaaatatgagacatttaactaaaagaagtttgaaattcaa |
226 |
Q |
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| T |
1006838 |
ttaattaatttgatagattagtacaacataaatgcaattgcaatacaaacatttaactag------------att------aaagaagtttgaaattcaa |
1006919 |
T |
|
| Q |
227 |
aaagtaaaacgcaataaatatgttgtgcatgcgattcctacaagttgaattgaaagagaaacagatatgaaaacaaaaattgaaaaggaatagaataata |
326 |
Q |
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| T |
1006920 |
aaagtaaaacgcaataaatatgttgtgcatgcgattcctacaagttgaattgaaagagaaacagatatgaaaacaaaaattgaaaaggaatagaagaata |
1007019 |
T |
|
| Q |
327 |
ataatacctagagagttgacatctgaagagggatttggaagcggaatgtgaatgtgaattgaaggaagaacggtggcgacattaggggttacatttggtg |
426 |
Q |
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| T |
1007020 |
---atacctagagagttgacatctgaagagggatttggaagcggaatgtgaatgtgaattgaaggaagaacggtggcgacattaggggtttcatttggtg |
1007116 |
T |
|
| Q |
427 |
aatcatcagaagaagaagaatctgatacatcaatttcatcttcatcccatggaaatggcctcttcatctca |
497 |
Q |
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| T |
1007117 |
aatcatcagaagaagaagaatctgatacatcaatttcatcttcatcccatggaaatggcctcttcatctca |
1007187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 54309463 - 54309429
Alignment:
| Q |
44 |
gatttgaactttggttcgccaagttgtgggagtct |
78 |
Q |
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| T |
54309463 |
gatttgaactttggttagccaagttgtgggagtct |
54309429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 1687044 - 1687090
Alignment:
| Q |
39 |
gccgagatttgaactttggttcgccaagttgtgggagtctaacccct |
85 |
Q |
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| T |
1687044 |
gccgagatttgaaccttggttcgccatgttgtgggaatctagcccct |
1687090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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