View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_15 (Length: 469)
Name: NF0493_low_15
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 32943343 - 32943611
Alignment:
| Q |
11 |
tgaaaactggagctgagcaagtctgtaaaacaaaatataaggatgccaaagccacatatccacttatttatgaggatagtcttccatatgcatgcttgga |
110 |
Q |
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| T |
32943343 |
tgaaaactggagctgagcaagtctgtaaaacaaaatataaggatgccaaagccacatatccacttatttatgaggatagtcttccatatgcatgcttgga |
32943442 |
T |
|
| Q |
111 |
tcttatttaccaatatacattgtttgttgatggatttggtaagtttgcatgcttgaaattgcattcactattattttactgtcatattcaaattaagatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32943443 |
tcttatttaccaatatacattgtttgttgatggatttggtaagtttgcatgcttgaaattgcattcactattattttactgtcatattcaaattaagatg |
32943542 |
T |
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| Q |
211 |
acatactcaaaaataggagcatgcctctagtattcttaggcaacctaagttaatctcttttaaattaac |
279 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
32943543 |
acatactcaaaaataggagcatacctctagtattcttaggcaacctaagttaatgtcttttaagttaac |
32943611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 32950524 - 32950672
Alignment:
| Q |
11 |
tgaaaactggagctgagcaagtctgtaaaacaaaatataaggatgccaaagccacatatccacttatttatgaggatagtcttccatatgcatgcttgga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32950524 |
tgaaaactggagctgagcaagtctgtaaaacaaaatataaggatgccaaagccacatatccacttatttatgaggatagtcttccatatgcatgcttgga |
32950623 |
T |
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| Q |
111 |
tcttatttaccaatatacattgtttgttgatggatttggtaagtttgca |
159 |
Q |
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| T |
32950624 |
tcttatttaccaatatacattgtttgttgatggatttggtaagtttgca |
32950672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 32951020 - 32951063
Alignment:
| Q |
236 |
tctagtattcttaggcaacctaagttaatctcttttaaattaac |
279 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32951020 |
tctaatattcttaggcaacctaagttaatctcttttaaattaac |
32951063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 314 - 429
Target Start/End: Complemental strand, 24313547 - 24313422
Alignment:
| Q |
314 |
tgttgccgaaagaaatcatttgctgcaagcttggaatttaact---attatttgctg-----ttaaagttgaatttttcagcataacataagctttctgt |
405 |
Q |
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|||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||| |||||| |
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| T |
24313547 |
tgttaccgaaagaaataatttgctgcaggcttggaatttaactaagattatttgctgttaaattaaagttgaaattttcagcataacagaagttttctgc |
24313448 |
T |
|
| Q |
406 |
cgaggc--ttttttcatatgcttgtg |
429 |
Q |
| |
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| |||| |||||||||||||||||| |
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| T |
24313447 |
caaggcttttttttcatatgcttgtg |
24313422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 314 - 429
Target Start/End: Complemental strand, 24355884 - 24355759
Alignment:
| Q |
314 |
tgttgccgaaagaaatcatttgctgcaagcttggaatttaact---attatttgctg-----ttaaagttgaatttttcagcataacataagctttctgt |
405 |
Q |
| |
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|||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||| |||||| |
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| T |
24355884 |
tgttaccgaaagaaataatttgctgcaggcttggaatttaactaagattatttgctgttaaattaaagttgaaattttcagcataacagaagttttctgc |
24355785 |
T |
|
| Q |
406 |
cgaggc--ttttttcatatgcttgtg |
429 |
Q |
| |
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| |||| |||||||||||||||||| |
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| T |
24355784 |
caaggcttttttttcatatgcttgtg |
24355759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 10328274 - 10328209
Alignment:
| Q |
91 |
cttccatatgcatgcttggatcttatttaccaatatacattgtttgttgatggatttggtaagttt |
156 |
Q |
| |
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||||||||| |||| |||||||| | ||||||||||||||| |||| |||||||| |||| |||| |
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| T |
10328274 |
cttccatatttatgcatggatcttgtataccaatatacattgcttgtggatggattcggtatgttt |
10328209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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