View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_low_17 (Length: 459)
Name: NF0493_low_17
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 30 - 436
Target Start/End: Complemental strand, 6969116 - 6968710
Alignment:
| Q |
30 |
atagtgaagggtttgatgagttggggactttaactcttgcaaaatggttttactgatttgtgtttgtgtgtgtatgcaaaacgaaacagcttttgctggt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6969116 |
atagtgaagggtttgatgagttggggactttaactcttgcaaaatggttttactgatttgtgtttctgtgtgtatgcaaaacgaaacagcttttgctggt |
6969017 |
T |
|
| Q |
130 |
ttcagtttgaaaatggaggacattaaaaaatacctcagtttttgtgctggtttcaagtttatattgttaaaaaacaactaaatattggtgatactggaac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969016 |
ttcagtttgaaaatggaggacattaaaaaatacctcagtttttgtgctggtttcaagtttatattgttaaaaaacaactaaatattggtgatactggaac |
6968917 |
T |
|
| Q |
230 |
atgacgatgatgaaaagtgcaggcaaaattagtttaccttacgaagaactttagtcctgtgtgaatatgtaatgtcaatggtatttgaatataa--actt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6968916 |
atgacgatgatgaaaagtgcaggcaaaattagtttaccttacgaagaactttagtcctgtgtgaatatgtaatgtcaatggtatttgaatataaacactt |
6968817 |
T |
|
| Q |
328 |
acatatatttagaatagcaatgctgaatagcacgagacgaaagagaaagagaaatgatatttgtaactagtttttcacaactcttatctctcataatcac |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| ||| |
|
|
| T |
6968816 |
acatatatttagaatagcaatgctgaatagtacgagacgaaagagaaagagaaatgatatttgtaaccagtttttgacaactc--gtctctcatactcat |
6968719 |
T |
|
| Q |
428 |
atgtgattt |
436 |
Q |
| |
|
||||||||| |
|
|
| T |
6968718 |
atgtgattt |
6968710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 221 times since January 2019
Visitors: 3465