View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_low_18 (Length: 457)

Name: NF0493_low_18
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_low_18
NF0493_low_18
[»] chr1 (10 HSPs)
chr1 (77-457)||(45792661-45793040)
chr1 (332-453)||(50004883-50005004)
chr1 (270-428)||(26793702-26793860)
chr1 (266-427)||(19806769-19806932)
chr1 (270-428)||(9383239-9383397)
chr1 (294-447)||(4950160-4950312)
chr1 (270-428)||(4076358-4076516)
chr1 (323-428)||(6768260-6768365)
chr1 (270-428)||(49236112-49236270)
chr1 (270-319)||(30951329-30951378)
[»] chr8 (9 HSPs)
chr8 (261-427)||(22573071-22573237)
chr8 (263-449)||(40028760-40028946)
chr8 (269-453)||(7547801-7547985)
chr8 (325-428)||(9028646-9028749)
chr8 (348-447)||(11066506-11066605)
chr8 (315-430)||(32889941-32890056)
chr8 (266-423)||(31734257-31734414)
chr8 (309-453)||(38503829-38503972)
chr8 (309-428)||(39283691-39283810)
[»] chr5 (5 HSPs)
chr5 (265-450)||(13039655-13039840)
chr5 (265-450)||(13109649-13109834)
chr5 (268-386)||(13417058-13417175)
chr5 (271-428)||(34731215-34731372)
chr5 (271-359)||(16290799-16290887)
[»] chr7 (10 HSPs)
chr7 (269-453)||(10026381-10026565)
chr7 (283-428)||(23318950-23319095)
chr7 (330-452)||(39644909-39645031)
chr7 (262-428)||(41482432-41482598)
chr7 (325-428)||(39594635-39594738)
chr7 (404-450)||(47038573-47038619)
chr7 (392-453)||(45980444-45980504)
chr7 (268-428)||(2333998-2334161)
chr7 (314-428)||(24429679-24429793)
chr7 (325-383)||(44107776-44107834)
[»] chr2 (11 HSPs)
chr2 (333-457)||(7670385-7670509)
chr2 (273-450)||(16567700-16567877)
chr2 (267-386)||(24447922-24448041)
chr2 (330-453)||(18665165-18665288)
chr2 (290-427)||(40626434-40626571)
chr2 (392-453)||(38490285-38490345)
chr2 (270-430)||(6452409-6452568)
chr2 (327-427)||(5256379-5256479)
chr2 (349-428)||(1529690-1529769)
chr2 (331-428)||(40054475-40054572)
chr2 (270-340)||(1529794-1529861)
[»] chr4 (16 HSPs)
chr4 (263-386)||(22202864-22202987)
chr4 (314-428)||(26635273-26635387)
chr4 (276-386)||(26183605-26183715)
chr4 (268-428)||(19181425-19181585)
chr4 (329-428)||(33235806-33235905)
chr4 (309-428)||(45413782-45413901)
chr4 (289-388)||(55945704-55945803)
chr4 (267-447)||(24155110-24155290)
chr4 (330-428)||(36625548-36625646)
chr4 (330-428)||(2183300-2183398)
chr4 (283-383)||(35320583-35320683)
chr4 (329-427)||(33451327-33451425)
chr4 (334-428)||(44126013-44126107)
chr4 (270-426)||(42964462-42964616)
chr4 (394-442)||(29539212-29539260)
chr4 (270-318)||(26635550-26635598)
[»] chr3 (6 HSPs)
chr3 (281-417)||(48936324-48936458)
chr3 (309-428)||(40416932-40417051)
chr3 (404-448)||(44764062-44764106)
chr3 (268-428)||(32490846-32491006)
chr3 (325-428)||(7038604-7038707)
chr3 (370-428)||(38457782-38457840)
[»] chr6 (3 HSPs)
chr6 (333-428)||(8573800-8573895)
chr6 (323-428)||(8547447-8547552)
chr6 (270-342)||(10099032-10099104)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 77 - 457
Target Start/End: Complemental strand, 45793040 - 45792661
Alignment:
Q  77 tcatcaagctaattacaagaagatgaataaaacaaaggagttgaaaaacacaagaaaagggtttatttgtgttgacatttttacacttattttcttaann 176  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  45793040 tcatcaagctaattataagaagatgaaaaaaacaaaggagttgaaaaacacaagaaaagggtttatttgtgttgacatttttacacttattttcttaatt 45792941  T
Q  177 nnnnnnaattaaaatgaaagaattttcaatcaaattatttcactttaactaaaaagacattggagaaacaatgaagttaaactgtaagagcccgtttggt 276  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45792940 ttttttaattaaaatgaaagaattttcaatcaaattatttcactttaactaaaaagacattggagaaacaatgaagttaaacggtaagagcccgtttggt 45792841  T
Q  277 gtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaa 376  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  45792840 gtgcaggataaggagacatgatatgattagaatatcctatcctgactcaatccgtt-tttggtgcaccaacagaaaatgataagtttaacatgtttctaa 45792742  T
Q  377 tcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcactataat 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45792741 tcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcattataat 45792661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 332 - 453
Target Start/End: Complemental strand, 50005004 - 50004883
Alignment:
Q  332 tgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaat 431  Q
    ||||||||||||||| |  ||| ||||| || ||| | ||||||||||||||||| | | ||||||| ||| ||||||||||||||||||||||||||||    
T  50005004 tgtttggtgcaccaataaaaaaggataatttaaacctatttctaatcctatcctaatcaccctttgttatttttatccttagtttttggtgggttagaat 50004905  T
Q  432 tatcctatcatgattagcacta 453  Q
    ||||||||||||||||||||||    
T  50004904 tatcctatcatgattagcacta 50004883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 270 - 428
Target Start/End: Original strand, 26793702 - 26793860
Alignment:
Q  270 gtttggtgtgcaggataaggagacaagatatgattagaa-tatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacat 368  Q
    ||||||||  || |||||| ||||| |||||||| |||| |||| |||||||| |||||||||||||||||||||||| || ||| ||||| || ||| |    
T  26793702 gtttggtgcacatgataagaagacatgatatgat-agaactatcatatcctgattcaatccgttgtttggtgcaccaatagaaaaggataacttaaactt 26793800  T
Q  369 gtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
     ||||||||||||||||| | | ||||||| ||| |||| ||||||||||||||||||||    
T  26793801 atttctaatcctatcctaatcaacctttgttatttttattcttagtttttggtgggttag 26793860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 427
Target Start/End: Complemental strand, 19806932 - 19806769
Alignment:
Q  266 gcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggt--gcaccaacaggaaatgataagttt 363  Q
    ||||||||||||  || |||||||||| | |||||||| | | ||||||||||| | |||||| | ||||||||  ||| ||| |||||| ||||| ||     
T  19806932 gcccgtttggtgcacatgataaggagataggatatgataacactatcctatccttattcaatctggtgtttggtttgcatcaataggaaaggataaatta 19806833  T
Q  364 aacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggtta 427  Q
    ||| | ||||||||||||||||||| |  ||||||  |||| ||||||||||||||||||||||    
T  19806832 aacctatttctaatcctatcctattcactctttgtttttctaatccttagtttttggtgggtta 19806769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 428
Target Start/End: Complemental strand, 9383397 - 9383239
Alignment:
Q  270 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatg 369  Q
    |||||||||  |||||| ||||| |||||||||| | | ||||  ||||||| | ||||| |||||||||||||||| |||||  ||||| || |||       
T  9383397 gtttggtgtataggatagggagaaaagatatgataaaactatcacatcctgattaaatccattgtttggtgcaccaataggaacggataaattaaaccaa 9383298  T
Q  370 tttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    ||||||||| ||||||| | | ||||||| ||| | ||||||| |||||| ||||||||    
T  9383297 tttctaatcttatcctactcaccctttgttattttcatccttaatttttgatgggttag 9383239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 447
Target Start/End: Original strand, 4950160 - 4950312
Alignment:
Q  294 aagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcc 393  Q
    |||||||||| |  |||||||||| ||  |||||  | ||||||||||| ||| || ||||||||| || |||   |||  |||| ||||||||| | ||    
T  4950160 aagatatgataaacatatcctatcttgtttcaatttgatgtttggtgcatcaatagaaaatgataatttaaactcattttcaatcatatcctatttaccc 4950259  T
Q  394 tttgtaattcttatccttagtttttggtgggttagaattatcctatcatgatta 447  Q
    ||||| ||| ||||||| |||||||||||||||||||||||| || ||||||||    
T  4950260 tttgttatttttatcct-agtttttggtgggttagaattatcataccatgatta 4950312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 428
Target Start/End: Complemental strand, 4076516 - 4076358
Alignment:
Q  270 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatg 369  Q
    ||||||||  || |||||||||| | |||||||| | | |||| || ||| | | |||| | ||||||||||| ||| |||||| ||||| || ||| |     
T  4076516 gtttggtgcacatgataaggagataggatatgataacactatcatacccttatttaatctggtgtttggtgcatcaataggaaaggataaattaaaccta 4076417  T
Q  370 tttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    || |||||||||||||||| |  ||||||  |||| |||||||||||||||||| ||||    
T  4076416 ttactaatcctatcctattcactctttgtttttctaatccttagtttttggtggattag 4076358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 428
Target Start/End: Original strand, 6768260 - 6768365
Alignment:
Q  323 tcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtg 422  Q
    |||||| ||||||||||| ||||| || ||||||||| || ||| | ||||  ||||||| ||||  | ||||||| ||| ||||||||| |||||||||    
T  6768260 tcaatctgttgtttggtgtaccaatagaaaatgataaattaaacttatttcctatcctattctatccaacctttgttatttttatccttaatttttggtg 6768359  T
Q  423 ggttag 428  Q
    ||||||    
T  6768360 ggttag 6768365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 428
Target Start/End: Original strand, 49236112 - 49236270
Alignment:
Q  270 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatg 369  Q
    |||||||| |||||||||  ||||| ||||||||   | |||| ||||||||   ||||  |||||||||||||||| || ||| ||||| || |||||     
T  49236112 gtttggtgcgcaggataactagacaggatatgatacaattatcatatcctgatgaaatctattgtttggtgcaccaatagaaaaggataaattaaacata 49236211  T
Q  370 tttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    ||||   ||||||||||   | ||||| | |||| ||||||| ||||||||||||||||    
T  49236212 tttcatttcctatcctacccaacctttcttattcatatccttggtttttggtgggttag 49236270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 30951329 - 30951378
Alignment:
Q  270 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcct 319  Q
    |||||||| ||||||||  |||||||||||||||||| ||||||||||||    
T  30951329 gtttggtgcgcaggatagagagacaagatatgattagcatatcctatcct 30951378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 261 - 427
Target Start/End: Original strand, 22573071 - 22573237
Alignment:
Q  261 taagagcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataag 360  Q
    ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22573071 taagagcccgtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataag 22573170  T
Q  361 tttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggtta 427  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22573171 tttaacctgtttctaatcctatcctattgaacctttgtaattcttatccttagtttttggtgggtta 22573237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 263 - 449
Target Start/End: Original strand, 40028760 - 40028946
Alignment:
Q  263 agagcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtt 362  Q
    ||||||||||||||| |||||||||||||||| |||||||||| |||||| ||||||| ||||||| |||||||||||| ||||||||||||||||| ||    
T  40028760 agagcccgtttggtgcgcaggataaggagacaggatatgattaaaatatcatatcctgcctcaatctgttgtttggtgcgccaacaggaaatgataactt 40028859  T
Q  363 taacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagc 449  Q
    |||| | |||||||||  |||||| |   ||||||| ||| ||||||||||  ||| ||||||||||||||||||||||||||||||    
T  40028860 taacctttttctaatctcatcctactcctcctttgttatttttatccttaggattttgtgggttagaattatcctatcatgattagc 40028946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 269 - 453
Target Start/End: Original strand, 7547801 - 7547985
Alignment:
Q  269 cgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacat 368  Q
    ||||||||| | || |||||||||||||||||||||| | |||| |||| || || |||||||||||||||||||||||| ||||||||||||||||| |    
T  7547801 cgtttggtgcgaagaataaggagacaagatatgattacattatcatatcttgtcttaatccgttgtttggtgcaccaacaagaaatgataagtttaacct 7547900  T
Q  369 gtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcacta 453  Q
     ||| | ||||||||| | |   ||||||  ||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7547901 attttttatcctatcccacttctcctttgatattattatccttagtttttggtgggttagaattatcctattatgattagcacta 7547985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 325 - 428
Target Start/End: Complemental strand, 9028749 - 9028646
Alignment:
Q  325 aatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtggg 424  Q
    |||| |||||||||||||||||||  ||| ||||| || ||| | ||| ||||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  9028749 aatcggttgtttggtgcaccaacataaaaggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttatccttggtttttgatggg 9028650  T
Q  425 ttag 428  Q
    ||||    
T  9028649 ttag 9028646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 348 - 447
Target Start/End: Original strand, 11066506 - 11066605
Alignment:
Q  348 aggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgatta 447  Q
    |||||| ||||| || ||| | ||||||||||||||||| | ||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||||||    
T  11066506 aggaaaggataacttaaacctatttctaatcctatcctactcagcctttgttatttttatccttaatttttggtaggttagaattatcctatcatgatta 11066605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 430
Target Start/End: Original strand, 32889941 - 32890056
Alignment:
Q  315 atcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagt 414  Q
    ||||||| ||||||||||||||| ||| |||| | ||||||||||||||||| | ||||||||||||||| | |   |||||||  || ||||||||||     
T  32889941 atcctgagtcaatccgttgtttgatgccccaatatgaaatgataagtttaacctatttctaatcctatcccacttctcctttgttgtttttatccttaga 32890040  T
Q  415 ttttggtgggttagaa 430  Q
    ||||||||||||||||    
T  32890041 ttttggtgggttagaa 32890056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 423
Target Start/End: Original strand, 31734257 - 31734414
Alignment:
Q  266 gcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaa 365  Q
    ||||||||||||  || ||||  |||||| ||||||||  || | ||||||||||  | |||||||||||||||||||||| | |||||||||| || ||    
T  31734257 gcccgtttggtgcacatgatagagagacatgatatgataggactttcctatcctgctttaatccgttgtttggtgcaccaataagaaatgataaattaaa 31734356  T
Q  366 catgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgg 423  Q
    | | |||| |||| ||||| ||  | ||||||| ||| ||||||||||||||||||||    
T  31734357 cctatttccaatcttatcccatccaccctttgttatttttatccttagtttttggtgg 31734414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 453
Target Start/End: Complemental strand, 38503972 - 38503829
Alignment:
Q  309 tatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatc 408  Q
    |||| |||||||  |||||  ||||||||||||||||| ||||||  |||| || |||    |||||| ||||||||| | | ||||||| ||| ||||     
T  38503972 tatcatatcctgtttcaatttgttgtttggtgcaccaa-aggaaagaataacttaaactcacttctaaccctatcctactcaccctttgttatttttatt 38503874  T
Q  409 cttagtttttggtgggttagaattatcctatcatgattagcacta 453  Q
     |||||||||||||||||||||||||   ||||| ||||||||||    
T  38503873 tttagtttttggtgggttagaattatttcatcataattagcacta 38503829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 39283691 - 39283810
Alignment:
Q  309 tatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaac-atgtttctaatcctatcctattgagcctttgtaattcttat 407  Q
    |||| |||||||| ||||||| ||||||| ||||||||||  ||| ||||| || ||| || |||| ||||||||| |||| | ||||| |  || ||||    
T  39283691 tatcatatcctgagtcaatccattgtttgatgcaccaacataaaaggataaattaaaccatttttc-aatcctatcatattcaccctttattttttttat 39283789  T
Q  408 ccttagtttttggtgggttag 428  Q
    | ||| |||||||||||||||    
T  39283790 ctttaatttttggtgggttag 39283810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 265 - 450
Target Start/End: Original strand, 13039655 - 13039840
Alignment:
Q  265 agcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagttta 364  Q
    ||||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||| || ||||| ||||||||||| || | |||||||||||||||||    
T  13039655 agcccgtttggtgcgcaggataaagagacaaaatatgattagtatatcctatcctgtcttaatccattgtttggtgcgcccataggaaatgataagttta 13039754  T
Q  365 acatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagca 450  Q
    |||| ||||||||  ||||||||  | ||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  13039755 acatatttctaattatatcctatccatcctttattatttttatccttagtttttggtgggttagaattttcctatcatgattagca 13039840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 265 - 450
Target Start/End: Original strand, 13109649 - 13109834
Alignment:
Q  265 agcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagttta 364  Q
    ||||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||| || ||||| ||||||||||| || | || ||||||||||||||    
T  13109649 agcccgtttggtgcgcaggataaagagacaaaatatgattagtatatcctatcctgtcttaatccattgtttggtgcgcccatagaaaatgataagttta 13109748  T
Q  365 acatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagca 450  Q
    |||| ||||||||| ||||||||  | ||||||| ||| ||||||||||||||||||||||||||||| || ||||||||||||||    
T  13109749 acatatttctaatcatatcctatccaccctttgttatttttatccttagtttttggtgggttagaattttcatatcatgattagca 13109834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 268 - 386
Target Start/End: Complemental strand, 13417175 - 13417058
Alignment:
Q  268 ccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaaca 367  Q
    |||||||||| ||| |||||||| ||| |||||||||| | |||  |||||||||||||||||  ||||||||||||||||| ||| ||||||||||||     
T  13417175 ccgtttggtgcgcatgataaggatacatgatatgattaaattattatatcctgactcaatccgc-gtttggtgcaccaacagaaaaagataagtttaacc 13417077  T
Q  368 tgtttctaatcctatccta 386  Q
    | |||||||||||| ||||    
T  13417076 tatttctaatcctaaccta 13417058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 428
Target Start/End: Original strand, 34731215 - 34731372
Alignment:
Q  271 tttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgt 370  Q
    ||||||| ||| ||||| |||| | |||||||| | | |||| ||||||   | ||||| |||||||||||||||| |||||| |||||  | ||| | |    
T  34731215 tttggtgcgcatgataaagagataggatatgataacactatcatatcctatttaaatcccttgtttggtgcaccaataggaaaggataaactaaacctat 34731314  T
Q  371 ttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    |  ||||||||||||||  | ||||||| ||| | |||||||||||| | ||||||||    
T  34731315 tgttaatcctatcctatcaatcctttgttattttaatccttagttttagctgggttag 34731372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 359
Target Start/End: Complemental strand, 16290887 - 16290799
Alignment:
Q  271 tttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataa 359  Q
    ||||||| ||||||||| |||||| |||||||| | | |||| |||||||  | ||||| ||||||||||| || | |||||| |||||    
T  16290887 tttggtgcgcaggataaagagacaggatatgataaaattatcttatcctgtttaaatcctttgtttggtgctcccataggaaaggataa 16290799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 269 - 453
Target Start/End: Original strand, 10026381 - 10026565
Alignment:
Q  269 cgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacat 368  Q
    ||||||||| |||||||||||||||| |||||||||||| |||| |||| || || ||||| |||||||||||||||||| ||||||||||||||||| |    
T  10026381 cgtttggtgcgcaggataaggagacaggatatgattagattatcatatcttgtcttaatcccttgtttggtgcaccaacatgaaatgataagtttaacct 10026480  T
Q  369 gtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcacta 453  Q
     ||||||||| ||||| | |   ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  10026481 atttctaatcatatcccactcctcctttgttattcttatccttagtttttggtggattagaattatcctattatgattagcacta 10026565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 283 - 428
Target Start/End: Complemental strand, 23319095 - 23318950
Alignment:
Q  283 gataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctat 382  Q
    |||||| ||||| |||||||| | | |||| |||||||| | |||| |||||||||| |||||||| |||| ||||| || ||| | ||| |||||||||    
T  23319095 gataagaagacaggatatgataacactatcatatcctgattaaatctgttgtttggtccaccaacatgaaaggataatttaaacctatttttaatcctat 23318996  T
Q  383 cctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||||    
T  23318995 cctattgagcctttgtaatttttatccttggtttttgatgggttag 23318950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 330 - 452
Target Start/End: Original strand, 39644909 - 39645031
Alignment:
Q  330 gttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttaga 429  Q
    |||||||||||| |||| || ||| ||||| || |||   ||| ||||||||||||| | | ||||||| ||| ||||||||||||||||||||||||||    
T  39644909 gttgtttggtgcgccaatagaaaaggataacttaaacccatttataatcctatcctactcatcctttgttatttttatccttagtttttggtgggttaga 39645008  T
Q  430 attatcctatcatgattagcact 452  Q
    |||||||||||||||||||||||    
T  39645009 attatcctatcatgattagcact 39645031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 428
Target Start/End: Complemental strand, 41482598 - 41482432
Alignment:
Q  262 aagagcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagt 361  Q
    ||||||||||||||||  || |||| | ||||| |||| ||| | | |||| | |||||| | ||| || |||||||||||||||||||||| ||||| |    
T  41482598 aagagcccgtttggtgcacatgataggaagacatgataggataaaactatcatctcctgatttaatgcgctgtttggtgcaccaacaggaaaggataact 41482499  T
Q  362 ttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    | ||| | ||| ||||| ||||||| | | ||||||| ||| |||||||||||||||||||||||||    
T  41482498 taaacctatttttaatcatatcctactcaccctttgttatttttatccttagtttttggtgggttag 41482432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 428
Target Start/End: Original strand, 39594635 - 39594738
Alignment:
Q  325 aatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtggg 424  Q
    |||||||||||||||||||||| | || ||| ||| || ||| | || |||||| |||| |||| | ||||||||||| |||||||||||||||| ||||    
T  39594635 aatccgttgtttggtgcaccaataagatatgctaaattaaacctattactaatcttatcatattcatcctttgtaatttttatccttagtttttgatggg 39594734  T
Q  425 ttag 428  Q
    ||||    
T  39594735 ttag 39594738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 450
Target Start/End: Original strand, 47038573 - 47038619
Alignment:
Q  404 ttatccttagtttttggtgggttagaattatcctatcatgattagca 450  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  47038573 ttatctttagtttttggtgggttagaattatcctatcatgattagca 47038619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 453
Target Start/End: Complemental strand, 45980504 - 45980444
Alignment:
Q  392 cctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcacta 453  Q
    ||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  45980504 cctttgttatttttatccttactttttggtgggt-agaattatcctatcatgattagcacta 45980444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 2334161 - 2333998
Alignment:
Q  268 ccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgact---caatccgttgtttggtgcaccaacaggaaatgataagttta 364  Q
    ||||||| || ||| |||||||||||| |||||||| | | |||| |||||||| |   ||||||| ||||||||||||||| ||||   ||||| || |    
T  2334161 ccgtttgatgcgcatgataaggagacatgatatgataacactatcatatcctgaatattcaatccggtgtttggtgcaccaataggattggataacttaa 2334062  T
Q  365 acatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    || | ||| ||||||||||||||| | | ||||| ||| |||||  | ||||||||| ||||||    
T  2334061 acctatttttaatcctatcctattcaccttttgttatttttatctctggtttttggttggttag 2333998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 428
Target Start/End: Original strand, 24429679 - 24429793
Alignment:
Q  314 tatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttag 413  Q
    |||||||| ||| || | || ||| |||||||| || ||||||||| || ||  | ||| |||||||||| || | | ||||||| ||| ||||||||||    
T  24429679 tatcctgattcattctgctgcttgatgcaccaatagaaaatgataatttaaaactatttataatcctatcttactcaccctttgttatttttatccttag 24429778  T
Q  414 tttttggtgggttag 428  Q
    |||||||||||||||    
T  24429779 tttttggtgggttag 24429793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 44107776 - 44107834
Alignment:
Q  325 aatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatc 383  Q
    ||||| |||||||||||||||| |||||||||||| || ||| | || |||||||||||    
T  44107776 aatcctttgtttggtgcaccaataggaaatgataaattaaaccttttcctaatcctatc 44107834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 7e-50; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 333 - 457
Target Start/End: Original strand, 7670385 - 7670509
Alignment:
Q  333 gtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaatt 432  Q
    |||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  7670385 gtttggtgcaccaatagaaaatgataagtttaacctgtttctaatcctatcctattgagcttttgtaattcttatccttaatttttggtgggttagaatt 7670484  T
Q  433 atcctatcatgattagcactataat 457  Q
    |||||||||||||||||| ||||||    
T  7670485 atcctatcatgattagcattataat 7670509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 273 - 450
Target Start/End: Complemental strand, 16567877 - 16567700
Alignment:
Q  273 tggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgttt 372  Q
    ||||| |||||||||||||||| ||||||||| || |||| |||| || || ||||||||||||||||||||||||| ||| |||||||||||| | |||    
T  16567877 tggtgcgcaggataaggagacatgatatgatttgattatcatatcatgtcttaatccgttgtttggtgcaccaacagaaaaggataagtttaacctattt 16567778  T
Q  373 ctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagca 450  Q
    |||||||||||  | |   ||||||| |||||||||| |||||||||||||||| |||||||||||| ||||||||||    
T  16567777 ctaatcctatctcactcctcctttgttattcttatccatagtttttggtgggttggaattatcctattatgattagca 16567700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 386
Target Start/End: Original strand, 24447922 - 24448041
Alignment:
Q  267 cccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaac 366  Q
    ||||||||||| |||||||||||||||| |||||||||| |||||  ||||||| |||||||||||||||||||  || | ||||||||||||||||||     
T  24447922 cccgtttggtgcgcaggataaggagacatgatatgattaaaatattttatcctgtctcaatccgttgtttggtgtgcccataggaaatgataagtttaat 24448021  T
Q  367 atgtttctaatcctatccta 386  Q
     | ||| ||||||| |||||    
T  24448022 ctatttgtaatcctgtccta 24448041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 330 - 453
Target Start/End: Original strand, 18665165 - 18665288
Alignment:
Q  330 gttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttaga 429  Q
    ||||||| ||||||||| |||||| ||||| || ||| | ||||||||  |||| || | | ||||||| | | ||||||||| ||||||||||||||||    
T  18665165 gttgtttcgtgcaccaaaaggaaaggataacttaaacctatttctaataatatcttactcaccctttgttaattttatccttaatttttggtgggttaga 18665264  T
Q  430 attatcctatcatgattagcacta 453  Q
    ||||||||||||||||||||||||    
T  18665265 attatcctatcatgattagcacta 18665288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 290 - 427
Target Start/End: Original strand, 40626434 - 40626571
Alignment:
Q  290 agacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattg 389  Q
    ||||| |||||||| | | |||| |||| ||| |||||| | ||||||||||||||| |||||| ||||| || || || ||||||||||||||||| |     
T  40626434 agacaggatatgataaaactatcatatcttgattcaatctgctgtttggtgcaccaataggaaaggataatttaaatatatttctaatcctatcctactc 40626533  T
Q  390 agcctttgtaattcttatccttagtttttggtgggtta 427  Q
    | ||||| | ||| |||||||||  |||||||||||||    
T  40626534 accctttattatttttatccttaaattttggtgggtta 40626571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 453
Target Start/End: Complemental strand, 38490345 - 38490285
Alignment:
Q  392 cctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgattagcacta 453  Q
    ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  38490345 cctttgttatttttatc-ttagtttttggtgggttagaattatcctatcatgattaacacta 38490285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 430
Target Start/End: Original strand, 6452409 - 6452568
Alignment:
Q  270 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatg 369  Q
    |||||||| ||| |||| ||||||| |||||||| | | ||||||||||    | ||||| | ||||| |||||||| | || ||||||| || ||| |     
T  6452409 gtttggtgcgcatgata-ggagacaggatatgataaaattatcctatccaatttaaatccatggtttgatgcaccaataagatatgataaattaaaccta 6452507  T
Q  370 tttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaa 430  Q
    || |||||| ||||||||| |  |||||||||||| |||||||||||||| ||||||||||    
T  6452508 ttactaatcttatcctattcacgctttgtaattctaatccttagtttttgttgggttagaa 6452568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 427
Target Start/End: Original strand, 5256379 - 5256479
Alignment:
Q  327 tccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggtt 426  Q
    |||| |||||||||||||   |||||||||||| || ||| ||||  ||||||||||||||||   |||||| ||| |||||||| ||||| | ||||||    
T  5256379 tccgctgtttggtgcaccggtaggaaatgataaattaaacttgttgttaatcctatcctattggctctttgttatttttatcctttgttttagctgggtt 5256478  T
Q  427 a 427  Q
    |    
T  5256479 a 5256479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 1529769 - 1529690
Alignment:
Q  349 ggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    |||||||||||||||||| | ||| ||||| ||||||| |   |||||||  |||||||||||  |||||||||||||||    
T  1529769 ggaaatgataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttag 1529690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 428
Target Start/End: Complemental strand, 40054572 - 40054475
Alignment:
Q  331 ttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    |||||||||||||||| || |||||||||  | ||| | ||  ||||||||||||||  | ||||||| ||| | |||||||||||| | ||||||||    
T  40054572 ttgtttggtgcaccaatagaaaatgataaactaaacctattgttaatcctatcctatcaatcctttgttattttaatccttagttttagctgggttag 40054475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 1529861 - 1529794
Alignment:
Q  270 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtg 340  Q
    |||||||| ||| ||||| | |||| |||||||||||| |||   |||||||||||||||| |||||||||    
T  1529861 gtttggtgcgcatgataacgggacaggatatgattagattat---atcctgactcaatccgctgtttggtg 1529794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 263 - 386
Target Start/End: Original strand, 22202864 - 22202987
Alignment:
Q  263 agagcccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtt 362  Q
    ||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| || | |||||||||||||| |||  | | | |||||||||||||    
T  22202864 agagcccgtttggtgcgcaggataaggagacaggatatgatcagaatatcctatcgtgtcccaatccgttgtttgttgcgaccatatgaaatgataagtt 22202963  T
Q  363 taacatgtttctaatcctatccta 386  Q
    |||| | ||| |||||||||||||    
T  22202964 taacctatttttaatcctatccta 22202987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 314 - 428
Target Start/End: Complemental strand, 26635387 - 26635273
Alignment:
Q  314 tatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttag 413  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||| |||||| | |||| ||| |||||||| |   ||||| | ||||||||||||||    
T  26635387 tatcctgactcaatccgttttttggtgcaccaacatgatatgataaatttaacctatttccaattctatcctactcctcctttattattcttatccttag 26635288  T
Q  414 tttttggtgggttag 428  Q
    |||||||||||||||    
T  26635287 tttttggtgggttag 26635273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 386
Target Start/End: Original strand, 26183605 - 26183715
Alignment:
Q  276 tgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttcta 375  Q
    |||||| ||||||||||||| ||| ||||| |||| | |||    ||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||    
T  26183605 tgtgcatgataaggagacaacatacgattaaaataacatatttaaactcaattccttgtttgatgcaccaacaggaaatgataagtttaacatatttcta 26183704  T
Q  376 atcctatccta 386  Q
    |||||||||||    
T  26183705 atcctatccta 26183715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 19181585 - 19181425
Alignment:
Q  268 ccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaaca 367  Q
    ||||||||||  || ||||  |||||| |||||||| | | |||||||||||||  |||||  |||||||||||||||||| || ||||||| || |||     
T  19181585 ccgtttggtgcacatgatagagagacatgatatgataaaattatcctatcctgatccaatctattgtttggtgcaccaacatgatatgataaattaaacc 19181486  T
Q  368 tgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    | ||||||||||||||||| | | ||||| | ||| || ||||||||||||||||| ||||    
T  19181485 tatttctaatcctatcctactcatcctttattatttttgtccttagtttttggtggattag 19181425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 428
Target Start/End: Complemental strand, 33235905 - 33235806
Alignment:
Q  329 cgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    ||||| |||||||||||| || |||| ||||||||||| ||||  ||||||||||||||||| ||||||||||| ||||||||| |||||| || |||||    
T  33235905 cgttgcttggtgcaccaatagaaaataataagtttaacctgttcttaatcctatcctattgaacctttgtaattattatccttaatttttgatgagttag 33235806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 45413901 - 45413782
Alignment:
Q  309 tatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatc 408  Q
    |||| |||| ||| |||||| ||||||||||||||||| |||||| ||||| || ||| | ||||  ||||||||||||  | ||||||| ||| |||||    
T  45413901 tatcatatcttgattcaatcggttgtttggtgcaccaataggaaaggataaattaaacctatttcctatcctatcctatctaacctttgttatttttatc 45413802  T
Q  409 cttagtttttggtgggttag 428  Q
    ||||||||||||||||||||    
T  45413801 cttagtttttggtgggttag 45413782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 388
Target Start/End: Complemental strand, 55945803 - 55945704
Alignment:
Q  289 gagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctatt 388  Q
    |||||| |||||||||| ||||||||| |||  ||||||||||||||||||||||||| |||||| ||||| |  ||  | |||||||||||||||||||    
T  55945803 gagacatgatatgattaaaatatcctacccttcctcaatccgttgtttggtgcaccaataggaaaggataaatccaatctatttctaatcctatcctatt 55945704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 447
Target Start/End: Original strand, 24155110 - 24155290
Alignment:
Q  267 cccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaac 366  Q
    |||||||||||  ||||||||| |||||  ||||||| | | |||| | |||||  ||||||  ||||||| |    ||| |||||||||||| || ||     
T  24155110 cccgtttggtgcacaggataagaagacagaatatgataatactatcatgtcctgtttcaatcttttgtttgatatgtcaataggaaatgataacttaaag 24155209  T
Q  367 atgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttagaattatcctatcatgatta 447  Q
     | ||||||||||||||||| | ||| ||||  ||| | |||||||||||||||||||| ||| |||||||||||||||||    
T  24155210 ctatttctaatcctatcctactcagcatttgatattttcatccttagtttttggtgggtcagagttatcctatcatgatta 24155290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 428
Target Start/End: Complemental strand, 36625646 - 36625548
Alignment:
Q  330 gttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    |||||||||||||| || |||| ||||||| || ||| | || | |||||||||||||| | ||||||||||||| ||||||| |||||| ||||||||    
T  36625646 gttgtttggtgcactaataggatatgataaattaaacctattacgaatcctatcctattcaccctttgtaattctaatccttactttttgttgggttag 36625548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 330 - 428
Target Start/End: Original strand, 2183300 - 2183398
Alignment:
Q  330 gttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    ||||||||||||||||| || ||| ||||| || |||   |||| |||||||||||||  | ||||||| ||| ||||||||| |||||||||||||||    
T  2183300 gttgtttggtgcaccaatagaaaaggataaattaaactcatttccaatcctatcctatccaacctttgttatttttatccttaatttttggtgggttag 2183398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 383
Target Start/End: Original strand, 35320583 - 35320683
Alignment:
Q  283 gataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctat 382  Q
    ||||||||||||| ||||||||| ||||||  ||| || || |||  |||||||| |||| ||||| |||| |||||||||||| | ||| |||||||||    
T  35320583 gataaggagacaatatatgattaaaatatctcatcatggcttaataagttgtttgctgcagcaacatgaaaggataagtttaacctatttttaatcctat 35320682  T
Q  383 c 383  Q
    |    
T  35320683 c 35320683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 33451327 - 33451425
Alignment:
Q  329 cgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggtta 427  Q
    |||||||||||||||||| | || |||||||  | ||| | || ||| | |||||||||| | ||||||||||| | |||||||||||||| |||||||    
T  33451327 cgttgtttggtgcaccaatatgatatgataaaataaacctattactacttctatcctattcatcctttgtaattataatccttagtttttgatgggtta 33451425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 428
Target Start/End: Original strand, 44126013 - 44126107
Alignment:
Q  334 tttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    ||||||||| ||| |||||||||||| || ||| | ||||||||||||||||||| | | |||||  |||| || ||| ||||||| ||||||||    
T  44126013 tttggtgcagcaataggaaatgataaattaaacttatttctaatcctatcctattcaccttttgtttttctaattctttgtttttgatgggttag 44126107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 426
Target Start/End: Complemental strand, 42964616 - 42964462
Alignment:
Q  270 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatg 369  Q
    |||||||| |||||||||| ||||| |||||||| | | ||||||||||||    |||||| | |||| |||||||| |||||| ||||| || |||       
T  42964616 gtttggtgcgcaggataagcagacaggatatgataaaactatcctatcctgctgaaatccggtatttgttgcaccaataggaaaggataatttaaaccca 42964517  T
Q  370 tttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggtt 426  Q
    || || ||||||||||||  |  || ||| ||| | |||||||||||||||||||||    
T  42964516 ttacttatcctatcctatcta--ctctgttattttaatccttagtttttggtgggtt 42964462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 442
Target Start/End: Original strand, 29539212 - 29539260
Alignment:
Q  394 tttgtaattcttatccttagtttttggtgggttagaattatcctatcat 442  Q
    ||||| ||| |||||| || |||||||||||||||||||||||||||||    
T  29539212 tttgttatttttatccctaatttttggtgggttagaattatcctatcat 29539260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 26635598 - 26635550
Alignment:
Q  270 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcc 318  Q
    |||||||| ||| |||||||||||| |||||||||||| |||| |||||    
T  26635598 gtttggtgcgcatgataaggagacatgatatgattagattatcatatcc 26635550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 281 - 417
Target Start/End: Complemental strand, 48936458 - 48936324
Alignment:
Q  281 aggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcct 380  Q
    |||||| | ||||| |||||||| ||| |||| |||||||  ||||||||||||||||||||||||||||||  ||||| || ||| ||||| |||||||    
T  48936458 aggataggaagacaggatatgataagactatcatatcctgtttcaatccgttgtttggtgcaccaacaggaa--gataatttaaacctgtttttaatcct 48936361  T
Q  381 atcctattgagcctttgtaattcttatccttagtttt 417  Q
    |||||| |   ||||||| ||| ||||||||||||||    
T  48936360 atcctacttctcctttgttatttttatccttagtttt 48936324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 40416932 - 40417051
Alignment:
Q  309 tatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatc 408  Q
    |||| |||||||  |||||||||||||||||||| |||||| ||||||||| || || || ||| |||||||||||||   | ||||| | |||||||||    
T  40416932 tatcatatcctgcttcaatccgttgtttggtgcatcaacagaaaatgataaattaaatatatttttaatcctatcctaccaaccctttattattcttatc 40417031  T
Q  409 cttagtttttggtgggttag 428  Q
    ||| ||||||| | ||||||    
T  40417032 cttggtttttgtttggttag 40417051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 448
Target Start/End: Complemental strand, 44764106 - 44764062
Alignment:
Q  404 ttatccttagtttttggtgggttagaattatcctatcatgattag 448  Q
    ||||||||||||||||| || ||||||||||||||||||||||||    
T  44764106 ttatccttagtttttggcggattagaattatcctatcatgattag 44764062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 428
Target Start/End: Original strand, 32490846 - 32491006
Alignment:
Q  268 ccgtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaaca 367  Q
    |||||||||| ||||||||| |||||| |||||||| | | |||| ||| ||   | ||||| |||||||||||||||| | |||| |||||    |||     
T  32490846 ccgtttggtgcgcaggataaagagacaggatatgataacactatcatattctatttaaatcctttgtttggtgcaccaatatgaaaggataatcgaaacc 32490945  T
Q  368 tgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    | || ||||| |||||||||  | ||||||| ||| | |||||||||||| | ||||||||    
T  32490946 tattgctaattctatcctatcaatcctttgttattttaatccttagttttagctgggttag 32491006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 428
Target Start/End: Original strand, 7038604 - 7038707
Alignment:
Q  325 aatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtggg 424  Q
    ||||| || |||||| ||| || |||| ||||||| || ||| | || ||||||||||| |||| | | ||||||||||| ||||||| |||||| ||||    
T  7038604 aatccattatttggtacactaataggatatgataaattaaacctattactaatcctatcgtattcatcttttgtaattctaatccttactttttgttggg 7038703  T
Q  425 ttag 428  Q
    ||||    
T  7038704 ttag 7038707  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 428
Target Start/End: Original strand, 38457782 - 38457840
Alignment:
Q  370 tttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    ||||||||||||||||||| | | ||||| | | ||||||||||| |||||||||||||    
T  38457782 tttctaatcctatcctattcaccttttgttacttttatccttagtatttggtgggttag 38457840  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 428
Target Start/End: Complemental strand, 8573895 - 8573800
Alignment:
Q  333 gtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggttag 428  Q
    |||||| ||| ||| |||||||||||| || ||| | ||||||||| |||| |||| | ||||||| ||| |||| ||||||||||||||||||||    
T  8573895 gtttggagcatcaataggaaatgataacttaaacctatttctaatcttatcatattcaccctttgttatttttatacttagtttttggtgggttag 8573800  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 428
Target Start/End: Complemental strand, 8547552 - 8547447
Alignment:
Q  323 tcaatccgttgtttggtgcaccaacaggaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtg 422  Q
    ||||||||  |||||| ||| ||| |||||| ||||| || ||| | ||||||||| |||| |||| | ||||||| ||| |||| ||||||||||||||    
T  8547552 tcaatccgccgtttggagcatcaataggaaaggataacttaaacctatttctaatcttatcatattcaccctttgttatttttatacttagtttttggtg 8547453  T
Q  423 ggttag 428  Q
    ||||||    
T  8547452 ggttag 8547447  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 10099032 - 10099104
Alignment:
Q  270 gtttggtgtgcaggataaggagacaagatatgattagaatatcctatcctgactcaatccgttgtttggtgca 342  Q
    |||||||| ||||||||  |||||| ||||||||||| |||||||||| |  |||||||   |||||||||||    
T  10099032 gtttggtgcgcaggatagagagacaggatatgattagcatatcctatcatatctcaatcttctgtttggtgca 10099104  T

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