View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_19 (Length: 455)
Name: NF0493_low_19
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 30 - 443
Target Start/End: Complemental strand, 11023338 - 11022925
Alignment:
| Q |
30 |
agaccaattaatgtcacaaaatcttctgatttctgcaatcaagtataatcattaaacagtaatgatatgaagacagttataaacatgagattcataaaca |
129 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023338 |
agaccaattaatgtcataaaatcttctgatttctgcaatcaagtataatcattaaacagtaatgatatgaagacagttataaacatgagattcataaaca |
11023239 |
T |
|
| Q |
130 |
tgaaacaaatcctcaccttccaaaaccagggcattaccccaaagaacaaaattgcagaatccctcactattgtcacaaattggcaaacaaaatggaagcg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023238 |
tgaaacaaatcctcaccttccaaaaccagggcattaccccaaagaacaaaattgcagaatccctcactattgtcacaaattggcaaacaaaatggaagcg |
11023139 |
T |
|
| Q |
230 |
actgaaatagtgaacagccatgtataagagttactagcaagacataccggaataaaacttcataattacacatcaacatctaataggataagaaatctac |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023138 |
actgaaatagtgaacagccatgtataagagttactagcaagacatactggaataaaacttcataattacacatcaacatctaataggataagaaatctac |
11023039 |
T |
|
| Q |
330 |
ataaaacaaaataaaaacctgtgaacaaggctataggatctagttttctgaaatgtatcttcgctgattactccttctaaagtctttggaagagtagtaa |
429 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023038 |
ataaaacaaaataaaaacctgtgatcaaggctataggatctagttttctgaaatgtatcttcgctgattactccttctaaagtctttggaagagtagtaa |
11022939 |
T |
|
| Q |
430 |
gtttgtttgcccta |
443 |
Q |
| |
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|||||||||||||| |
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| T |
11022938 |
gtttgtttgcccta |
11022925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 355 - 434
Target Start/End: Original strand, 29813554 - 29813633
Alignment:
| Q |
355 |
caaggctataggatctagttttctgaaatgtatcttcgctgattactccttctaaagtctttggaagagtagtaagtttg |
434 |
Q |
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|||| ||||||| ||||| ||||| |||| | |||| |||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
29813554 |
caagactataggctctagatttctcaaatttctcttggctgattactccttctaaagactttggaagagtaggaagtttg |
29813633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 29813196 - 29813229
Alignment:
| Q |
38 |
taatgtcacaaaatcttctgatttctgcaatcaa |
71 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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|
| T |
29813196 |
taatgtcacaaaatctcctgatttctgcaatcaa |
29813229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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