View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_low_2 (Length: 746)
Name: NF0493_low_2
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_2 |
 | |
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| [»] chr7 (7 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 85 - 746
Target Start/End: Complemental strand, 16944099 - 16943425
Alignment:
| Q |
85 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnnntgtattactcaagtaattaca |
184 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
16944099 |
tcatcagtactgatatacactgaaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccaaaaaaaatgtattactcaagtaattact |
16944000 |
T |
|
| Q |
185 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcataga |
284 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16943999 |
ctgt---accaatctattgtttctgttgaataacattgcagtcgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
16943903 |
T |
|
| Q |
285 |
tggagtcttaattgtttccacatttatttttccttccccttcatctgctgaaacagcacggctt------------------ttataatttaaaaaatat |
366 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
16943902 |
tggaggcttaattgcttctacatttatttttccttccccttcatctactgaaacagcacggcttgaatatcacctattagagttataattcaaaaaatat |
16943803 |
T |
|
| Q |
367 |
gagcaagacagaagaaaacgaatttatgagcaagacagaatgagagggactaagtaaaaaagaattacctcatcaatacagtcgacggatgcattcagaa |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
16943802 |
gagcaagacagaagaaaacgaatttatgagcaagacataatgagagggccaaagtaaaaaagaattaactcatcaatacagtcgatggatgcatgcagaa |
16943703 |
T |
|
| Q |
467 |
gctccacaatatagcatgctttcgtctttaaatttccatttgaatcaatcacttgatcgattttgtaattgtaatctaaagtcagctctttcatgctcgg |
566 |
Q |
| |
|
||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
16943702 |
gcttcacaataa--catactttcgtctttaaatttccatttgaatcagtcacttgattgatcttgtaattgtaatctaaagtcagctctttcatgctcgg |
16943605 |
T |
|
| Q |
567 |
aatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcaccgtaaagaacatttcgagcaaacaaattgggagaacaactatggttg |
666 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
16943604 |
aatgttctcagctgcatatagcatgatttgtggaatccttggaacatcatcatcgtaaagaacatttcgagcaaacaaattgggagagcaactatggttg |
16943505 |
T |
|
| Q |
667 |
ataaaccttgcctcgttaccatacttagcagcatcaatggtaaacctaccactatcacatcgatcatcaatgacctcttt |
746 |
Q |
| |
|
||||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16943504 |
ataaaccttcccacgttaccatacttagcggcatcaatgttaaacctaccactatcacatcgatcatcaatgacctcttt |
16943425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 85 - 739
Target Start/End: Complemental strand, 15450535 - 15449861
Alignment:
| Q |
85 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnnntgtattactcaagtaattaca |
184 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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|
| T |
15450535 |
tcatcagtactgatatacactgaaaatcatgttgtagcaaaaatctaaacaagacatgttcaacttcatccaaaaagaatgtattactcaagtaattata |
15450436 |
T |
|
| Q |
185 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcataga |
284 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15450435 |
ctgttgtaccaatctattgtttctgttgaataacattgcagtcgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
15450336 |
T |
|
| Q |
285 |
tggagtcttaattgtttccacatttatttttccttccccttcatctgctgaaacagcacggctt------------------ttataatttaaaaaatat |
366 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||| | |
|
|
| T |
15450335 |
tggaggcttaattgcttccaaatttatttttccttccccttcacctactgaaacagcacggcttgaataccacctattagagttataattcaaaaaattt |
15450236 |
T |
|
| Q |
367 |
gagcaagacaga--agaaaacgaatttatgagcaagacagaatgagagggactaagtaaaaaagaattacctcatc--aatacagtcgacggatgcattc |
462 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| ||| |||||| | |||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
15450235 |
gagcaagacagagaagaaaacgaatttataagcaagacaaaataagagggccaaagtaaaaaacaattacctcatctcaatacagtcgacggatgcattc |
15450136 |
T |
|
| Q |
463 |
agaagctccacaatatagcatgctttcgtctttaaatttccatttgaatcaatcacttgatcgattttgtaattgtaatctaaagtcagctctttcatgc |
562 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
15450135 |
agaagctccacaataa--catgctttcgtctttaaatttccatttgaatcaatcacttgatcgatcttttaattgtaatctaaagtcagctctttcatgc |
15450038 |
T |
|
| Q |
563 |
tcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcaccgtaaagaacatttcgagcaaacaaattgggagaacaactatg |
662 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15450037 |
tcggaatgttctcagctgcatatagcatgatgtgtggaatcctcagatcatcatcatcgtaaagaacatttcgagcaaacaaattgggagaacaactatg |
15449938 |
T |
|
| Q |
663 |
gttgataaaccttgcctcgttaccatacttagcagcatcaatggtaaacctaccactatcacatcgatcatcaatga |
739 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15449937 |
gttgataaaccttgccacgttaccatacttagcagcatcaatggtaaacctaccactatcacatcgatcatcaatga |
15449861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 364 - 746
Target Start/End: Complemental strand, 15489113 - 15488731
Alignment:
| Q |
364 |
tatgagcaagacaga--agaaaacgaatttatgagcaagacagaatgagagggactaagtaaaaaagaattacctcatcaatacagtcgacggatgcatt |
461 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15489113 |
tatgagcaagacagagaagaaaataaatttatgagcaagacagaatgagagggccaaagtaaaaaagaattacctcatcaataaagtcgacggatgcatt |
15489014 |
T |
|
| Q |
462 |
cagaagctccacaatatagcatgctttcgtctttaaatttccatttgaatcaatcacttgatcgattttgtaattgtaatctaaagtcagctctttcatg |
561 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15489013 |
cagaagctccacaataa--catgctttcgtctttaaatttccatttgaatcaatcgcttgatcgatcttgtaattgtaatctaaagtcagctctttcatg |
15488916 |
T |
|
| Q |
562 |
ctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcaccgtaaagaacatttcgagcaaacaaattgggagaacaactat |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15488915 |
ctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcatcgtaaagaacatttcgaacaaacaaattgggagaacaactat |
15488816 |
T |
|
| Q |
662 |
ggttgataaaccttgcctcgttaccatacttagcagcatcaatggtaaacctaccactatcacatcgatcatcaatgacctcttt |
746 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
15488815 |
ggttgataaaccttgccacgttaccatacttagcagcatcaatggtaaacctaccactatcacatcgatcatcaacgccctcttt |
15488731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 364 - 746
Target Start/End: Complemental strand, 15430718 - 15430336
Alignment:
| Q |
364 |
tatgagcaagacaga--agaaaacgaatttatgagcaagacagaatgagagggactaagtaaaaaagaattacctcatcaatacagtcgacggatgcatt |
461 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15430718 |
tatgagcaagacagagaagaaaataaatttatgagcaagacagaatgagagggccaaagtaaaaaagaattacctcatcaatatagtcgacggatgcatt |
15430619 |
T |
|
| Q |
462 |
cagaagctccacaatatagcatgctttcgtctttaaatttccatttgaatcaatcacttgatcgattttgtaattgtaatctaaagtcagctctttcatg |
561 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
15430618 |
cagaagctccacaataa--catgctttcgtctttaaatttccatttgaatcaatctcttgatcgatcttttaattgtaatctaaagtcagctctttcatg |
15430521 |
T |
|
| Q |
562 |
ctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcaccgtaaagaacatttcgagcaaacaaattgggagaacaactat |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15430520 |
ctcggaatgttctcagctgcatatagcatgatgtgtggaatccttggaacatcatcatcgtaaagaacatttcgaacaaacaaattgggagaacaactat |
15430421 |
T |
|
| Q |
662 |
ggttgataaaccttgcctcgttaccatacttagcagcatcaatggtaaacctaccactatcacatcgatcatcaatgacctcttt |
746 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
15430420 |
ggttgataaaccttgccacgttaccatacttagcagcatcaatggtaaacctaccactatcacatcgatcatcaacgccctcttt |
15430336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 85 - 348
Target Start/End: Complemental strand, 15489470 - 15489207
Alignment:
| Q |
85 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnnntgtattactcaagtaattaca |
184 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15489470 |
tcatcagtactgatatacactgaaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccaaaaaaaatgtattactcaagtaattaca |
15489371 |
T |
|
| Q |
185 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcataga |
284 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15489370 |
ctgttgtaccaatctattgtttctgttgaataacattgcagttgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
15489271 |
T |
|
| Q |
285 |
tggagtcttaattgtttccacatttatttttccttccccttcatctgctgaaacagcacggctt |
348 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15489270 |
tggaggcttaattgcttccacatttatttttccttccccttcatctactgaaacagcacggctt |
15489207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 85 - 348
Target Start/End: Complemental strand, 15431075 - 15430812
Alignment:
| Q |
85 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnnntgtattactcaagtaattaca |
184 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15431075 |
tcatcagtactgatatacactgaaaatcatgttgtagcaaaaatctaaacaagacatgttcaacttcatccaaaaataatgtattactcaagtaattaca |
15430976 |
T |
|
| Q |
185 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcataga |
284 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15430975 |
ctgttgtaccaatctattgtttctgttgaataacattgcagttgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
15430876 |
T |
|
| Q |
285 |
tggagtcttaattgtttccacatttatttttccttccccttcatctgctgaaacagcacggctt |
348 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15430875 |
tggaggcttaattgcttccacatttatttttccttccccttcatctactgaaacagcacggctt |
15430812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 85 - 336
Target Start/End: Complemental strand, 15557511 - 15557260
Alignment:
| Q |
85 |
tcatcaggactgatatacactggaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccnnnnnnnntgtattactcaagtaattaca |
184 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15557511 |
tcatcagtactgatatacactgaaaatcatgtagtagcaaaaatctaaacaagacatgttcaacttcatccaaaaaaaatgtattactcaagtaattaca |
15557412 |
T |
|
| Q |
185 |
ctgttgtaccaatctattgtttttgttgaataacattgcagttgcaagggaactaaaaactatataaagtaataattgtctgcaagaaaaagatcataga |
284 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15557411 |
ctgttgtaccaatctattgtttctgttgaataacattgcagtcgcaagggaactaaaaactatataaagtaatatttgtctgcaagaaaaagatcataga |
15557312 |
T |
|
| Q |
285 |
tggagtcttaattgtttccacatttatttttccttccccttcatctgctgaa |
336 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15557311 |
tggaggcttaattgcttccacatttatttttccttccccttcatctactgaa |
15557260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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