View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_20 (Length: 452)
Name: NF0493_low_20
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 9796162 - 9796088
Alignment:
| Q |
193 |
ctcctaggagtatgaccggcaacaacaagagtagagaccaaaaggagattaaggaagagaatgaaaatggacccaaca |
270 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9796162 |
ctcctaggagtatgactggcaacaa---gagtagagaccaaaaggagattaaggaagataatgaaaatggacccaaca |
9796088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 9802151 - 9802077
Alignment:
| Q |
193 |
ctcctaggagtatgaccggcaacaacaagagtagagaccaaaaggagattaaggaagagaatgaaaatggacccaaca |
270 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
9802151 |
ctcctaggagtatgactggcaacaa---gagtagagaccaaaaggagattaaggaagataatgaaaatggacccaaca |
9802077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 9781263 - 9781210
Alignment:
| Q |
217 |
acaagagtagagaccaaaaggagattaaggaagagaatgaaaatggacccaaca |
270 |
Q |
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||||||||||| || |||| ||||||||||||||||||||||||||| |||||| |
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| T |
9781263 |
acaagagtagatacaaaaatgagattaaggaagagaatgaaaatggatccaaca |
9781210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 9755724 - 9755678
Alignment:
| Q |
217 |
acaagagtagagaccaaaaggagattaaggaagagaatgaaaatgga |
263 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||||||||||||| |
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| T |
9755724 |
acaagagtagagacaaaaatgagatgaaggaagagaatgaaaatgga |
9755678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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