View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_21 (Length: 452)
Name: NF0493_low_21
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 30 - 391
Target Start/End: Complemental strand, 27483366 - 27483005
Alignment:
| Q |
30 |
gtctccataactacatcgcaattgcagccgctttttagaggattctgaggtctatacaagggcatcacaaacacaattttagtcacatcggccacatttc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
27483366 |
gtctccataactacatcgcaattgcagccgctttttagaggattttgaggtctatacaagggcatcacaaacacaattttagtcacatcgtccatatttc |
27483267 |
T |
|
| Q |
130 |
accacaatgtaaaggttcacatcgtgaccacaagtgcgactgcaatcgcaatttaaaacaatgattacaagtgcaactatgatcacatcaacaatttatt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27483266 |
accacaatgtaaaggttcacatcgtgaccacaagtgcgactgcaatcgcaatttaaaacaatgattacaagtgcaactatgatcacatcaacaatttatt |
27483167 |
T |
|
| Q |
230 |
atgcttcttagccaaaccctcggatcctttaagtggaacaaaaggtggttacatatcagctatagtacagcagcgtatccgaatttgaacaaatcactac |
329 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
27483166 |
atgcttcttagccaaaccctcagatcctttaagtggaacaaaaggtggttacatatcagctataatacagcagcatatccgaatttgaacaaatcactac |
27483067 |
T |
|
| Q |
330 |
tttcagtgatatgtgatggacaactttgctacttactagcattatcgtatattactatttct |
391 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| |
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| T |
27483066 |
tttccatgatatgtgatggacaactttgctacttactagcattaacatatatgactatttct |
27483005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 27520038 - 27520288
Alignment:
| Q |
38 |
aactacatcgcaattgcagccgctttttagaggattctgaggtctatacaagggcatcacaaacacaattttagtcacatcggccacatttcaccacaat |
137 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
27520038 |
aactacatcgcaattgcagccgctttttagaggattttgaggtctctacaagggcgtcacaaacacaattttagtcacatcggccgcatttccccacaat |
27520137 |
T |
|
| Q |
138 |
gtaaaggttcacatcgtgaccacaagtgcgactgcaatcgcaatttaaaacaatgattacaagtgcaactatgatcacatcaacaatttattatgcttct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27520138 |
gtaaaggttcacatcgtgaccacaagtgcgactgcaatcgcaatttaaaacaatgattacaagtgcaactatgatcacatcaacaatttattatgcttct |
27520237 |
T |
|
| Q |
238 |
tagccaaaccctcggatcc------tttaagtggaacaaaaggtggttaca |
282 |
Q |
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||||||||||| | ||||| ||||||||||||||||||||| |||| |
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| T |
27520238 |
tagccaaacccccagatcctacatatttaagtggaacaaaaggtggctaca |
27520288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 94 - 282
Target Start/End: Complemental strand, 18987659 - 18987465
Alignment:
| Q |
94 |
tcacaaacacaattttagtcacatcggccacatttcaccacaatgtaaaggttcacatcgtgaccacaagtgcgactgcaatcgcaatttaaaacaatga |
193 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18987659 |
tcacaaacacaattttagtcacatcggctgcatttccccacaatgtaatggttcacatcttgaccacaagtgcgactgcaatcgcaatttaaaacaatga |
18987560 |
T |
|
| Q |
194 |
ttacaagtgcaactatgatcacatcaacaatttattatgcttcttagccaaaccctcggatcct------ttaagtggaacaaaaggtggttaca |
282 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||||||||||| |||| |
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| T |
18987559 |
ttacaagtgcaactatgatcacatcaacagtttattatgcttcttagccaaacccccatatcctacataattaagtggaacaaaaggtggctaca |
18987465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 282 - 387
Target Start/End: Complemental strand, 18987000 - 18986895
Alignment:
| Q |
282 |
atatcagctatagtacagcagcgtatccgaatttgaacaaatcactactttcagtgatatgtgatggacaactttgctacttactagcattatcgtatat |
381 |
Q |
| |
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||||| ||||||||||| |||| |||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
18987000 |
atatcggctatagtacaacagcatatccgaatttgaacaaaccactactttccgtgatctgtgatggacaactttgttacttactagcattaacgtatat |
18986901 |
T |
|
| Q |
382 |
tactat |
387 |
Q |
| |
|
||||| |
|
|
| T |
18986900 |
gactat |
18986895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 18987712 - 18987678
Alignment:
| Q |
34 |
ccataactacatcgcaattgcagccgctttttaga |
68 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
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| T |
18987712 |
ccataactacatcgcaattgccgccgctttttaga |
18987678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 54 - 257
Target Start/End: Original strand, 29566864 - 29567067
Alignment:
| Q |
54 |
cagccgctttttagaggattctgaggtctatacaagggcatcacaaacacaattttagtcacatcggccacatttcaccacaatgtaaaggttcacatcg |
153 |
Q |
| |
|
||||||| |||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| || |
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| T |
29566864 |
cagccgcactttagagggttttgaggtctctacaagggtgtcacaaacacaattttagtcacatcggccacattttccgacaatgtaaaagttcacagcg |
29566963 |
T |
|
| Q |
154 |
tgaccacaagtgcgactgcaatcgcaatttaaaacaatgattacaagtgcaactatgatcacatcaacaatttattatgcttcttagccaaaccctcgga |
253 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||| ||||| | | |||||||||||| ||||| ||||||||||| |||||||||| | || |
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| T |
29566964 |
tgaccacaagtgcgactgcaatagcaatttgaaacaatgattataagtgaatccatgatcacatcagcaattcattatgcttctaagccaaacccccaga |
29567063 |
T |
|
| Q |
254 |
tcct |
257 |
Q |
| |
|
|||| |
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|
| T |
29567064 |
tcct |
29567067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 115 - 248
Target Start/End: Complemental strand, 32432049 - 32431916
Alignment:
| Q |
115 |
catcggccacatttcaccacaatgtaaaggttcacatcgtgaccacaagtgcgactgcaatcgcaatttaaaacaatgattacaagtgcaactatgatca |
214 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||| |
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|
| T |
32432049 |
catcggccacatttttccacaatgtataggttcacagtgtgaccacaagtgcaactgcaatcgcaatttaaaatcacgattacaagtgcaactacgatca |
32431950 |
T |
|
| Q |
215 |
catcaacaatttattatgcttcttagccaaaccc |
248 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |
|
|
| T |
32431949 |
gatcagcaatttattatgcttctaagccaaaccc |
32431916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 282 - 388
Target Start/End: Complemental strand, 29426305 - 29426199
Alignment:
| Q |
282 |
atatcagctatagtacagcagcgtatccgaatttgaacaaatcactactttcagtgatatgtgatggacaactttgctacttactagcattatcgtatat |
381 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||| |||||||||| ||||| ||||| | | |||||| |||||||||||||||| ||||||| |
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|
| T |
29426305 |
atatcggctatagtactgcagcgtatccgaatttgaacaaaccactactttctgtgatctgtgaagaaaaacttttctacttactagcattaacgtatat |
29426206 |
T |
|
| Q |
382 |
tactatt |
388 |
Q |
| |
|
|||||| |
|
|
| T |
29426205 |
gactatt |
29426199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 372
Target Start/End: Original strand, 29567480 - 29567559
Alignment:
| Q |
293 |
agtacagcagcgtatccgaatttgaacaaatcactactttcagtgatatgtgatggacaactttgctacttactagcatt |
372 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
29567480 |
agtactgcagcgtatccgaatttgaacaaaccactactttctgtgatctgtgaaggacaactttgctacttactagcatt |
29567559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 25519814 - 25519733
Alignment:
| Q |
131 |
ccacaatgtaaaggttcacatcgtgaccacaagtgcgactgcaatcgcaatttaaaacaatgattacaagtgcaactatgatca |
214 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| | |||||||||| |||||||||| |||||||||||||| |
|
|
| T |
25519814 |
ccacaatgtaaaggttcagt--gtgaccacaagtgcgactgcaatagtaatttaaaaccatgattacaaatgcaactatgatca |
25519733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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