View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_low_23 (Length: 443)

Name: NF0493_low_23
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_low_23
NF0493_low_23
[»] chr1 (8 HSPs)
chr1 (14-350)||(48585847-48586188)
chr1 (275-350)||(48640420-48640495)
chr1 (304-345)||(48662059-48662100)
chr1 (304-345)||(48667648-48667689)
chr1 (41-96)||(48589927-48589986)
chr1 (41-96)||(48595011-48595070)
chr1 (41-96)||(48599622-48599681)
chr1 (307-345)||(48629363-48629401)
[»] chr8 (1 HSPs)
chr8 (273-351)||(25892445-25892523)


Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 48586188 - 48585847
Alignment:
Q  14 gagatgaagtgtggtaaaatgtagtccacaaatataattaatttcattatcgtttttgcattaaatatgacaaggaaaaaatacaatttgccaaaacaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48586188 gagatgaagtgtggtaaaatgtagtccacaaatataattaatttcattatcgtttttgcattaaatatgacaaggaaaaaatacaatttgccaaaacaaa 48586089  T
Q  114 tgacaaagacaaaatattattattaatttattagaatgttgtcaaacctgtg-----acacaagggaagaggaagtctttcttccaatataagagagcaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||    
T  48586088 tgacaaagacaaaatattattattaatttattagaatgttgtcaaacctgtgctgtgacacaagggaagaggaagtctttcttccaatataagagagcaa 48585989  T
Q  209 gtattctcttgctataggtatctccaactttgaagaagaaaatcactcaataaataataaaaagaaaaatgacatacgaagatcccattaagcttctcct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585988 gtattctcttgctataggtatctccaactttgaagaagaaaatcactcaataaataataaaaagaaaaatgacatacgaagatcccattaagcttctcct 48585889  T
Q  309 tgtctcttttccagcacaaggacacataaaccatcttgttgg 350  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  48585888 tgtctcttttccagcacaaggacacataaaccatcttgttgg 48585847  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 48640495 - 48640420
Alignment:
Q  275 aaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttgg 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48640495 aaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttgg 48640420  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 345
Target Start/End: Complemental strand, 48662100 - 48662059
Alignment:
Q  304 ctccttgtctcttttccagcacaaggacacataaaccatctt 345  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  48662100 ctccttgtttcttttccagcacaaggacacataaaccctctt 48662059  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 345
Target Start/End: Complemental strand, 48667689 - 48667648
Alignment:
Q  304 ctccttgtctcttttccagcacaaggacacataaaccatctt 345  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  48667689 ctccttgtttcttttccagcacaaggacacataaaccctctt 48667648  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 48589986 - 48589927
Alignment:
Q  41 acaaatataattaatttcattatcgtttttgcattaaat----atgacaaggaaaaaata 96  Q
    |||||||| ||||||||||||| |||||||||| |||||    |||||||||||||||||    
T  48589986 acaaatatgattaatttcattaccgtttttgcagtaaatagcaatgacaaggaaaaaata 48589927  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 48595070 - 48595011
Alignment:
Q  41 acaaatataattaatttcattatcgtttttgcattaaat----atgacaaggaaaaaata 96  Q
    |||||||| ||||||||||||| |||||||||| |||||    |||||||||||||||||    
T  48595070 acaaatatgattaatttcattaccgtttttgcagtaaatagcaatgacaaggaaaaaata 48595011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 48599681 - 48599622
Alignment:
Q  41 acaaatataattaatttcattatcgtttttgcattaaat----atgacaaggaaaaaata 96  Q
    |||||||| ||||||||||||| |||||||||| |||||    |||||||||||||||||    
T  48599681 acaaatatgattaatttcattaccgtttttgcagtaaatagcaatgacaaggaaaaaata 48599622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 48629401 - 48629363
Alignment:
Q  307 cttgtctcttttccagcacaaggacacataaaccatctt 345  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  48629401 cttgtttcttttccagcacaaggacacataaaccctctt 48629363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 273 - 351
Target Start/End: Original strand, 25892445 - 25892523
Alignment:
Q  273 aaaaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggt 351  Q
    ||||||| || || |||||||||||||||| ||||||||||||||||||   ||| ||||| ||||||||||| |||||    
T  25892445 aaaaatggcaaacaaagatcccattaagctcctccttgtctcttttccatttcaacgacacctaaaccatcttcttggt 25892523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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