View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_25 (Length: 438)
Name: NF0493_low_25
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 30 - 427
Target Start/End: Complemental strand, 7433163 - 7432766
Alignment:
| Q |
30 |
catatgaaaaagagaattctttatcaataaaagtcgagttaaaatagagggagtgcaattaatcaaattaaaaagcttcacatatattttgtaattttct |
129 |
Q |
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| T |
7433163 |
catatgaaaaagagaattctttatcaataaaagtcgagttaaaatagagggagtgcaattaatcaaattaaaaagcttcacatatattttgtcattttct |
7433064 |
T |
|
| Q |
130 |
ttgtattgaagaaagaaagggaaaaggtaagaaaagacgttgggtacgtaaagtatatgtgctaccttggttgagacatgatgacaagttatcggctgag |
229 |
Q |
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| T |
7433063 |
ttgtattgaagaaagaaagggaaaaggtaagaaaagacgttgggtacgtaaagtatatgtgctaccttggttgagacatgatgacaagttatcggctgag |
7432964 |
T |
|
| Q |
230 |
aggccaactatccacttaaaaagaaacctataatctaatctaataatctcgttggtctataactctattaaatctaaattcttatctaccatcatttcac |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7432963 |
aggccaactatccacttaaaaagaaacctataatctaatctaataatctcgttggtctataactctattaaatctaaattcttatctaccatcatttcac |
7432864 |
T |
|
| Q |
330 |
tcacatgctcatccatttcaacccaattctcttagcactataactgtatcaatattcaatattgggaccatctcatcacaaaccatgtcaaatttcat |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7432863 |
tcacatgctcatccatttcaacccaattctcttagcactataactgtatcaatattcaatattgggaccatctcatcacaaaccatgtcaaatttcat |
7432766 |
T |
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