View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_28 (Length: 429)
Name: NF0493_low_28
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 30 - 424
Target Start/End: Complemental strand, 3189093 - 3188699
Alignment:
| Q |
30 |
tactattggtttctttcattggtctaacattgtttccttccctcttcagctggcaaggttgaggaagatgctgttgttgatagtaaaattttacaatatt |
129 |
Q |
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| T |
3189093 |
tactattggtttctttcattggtctaacattgtttccttccctcttcagctggcaaggttgaggaagatgctgttgttgatagtaaaattttacaatatt |
3188994 |
T |
|
| Q |
130 |
gtagcatagaccaaaaagagaagaaatcacttggtgaacttgagcaagattttcttcaagcacttcaagtataaacaattatttcttctcattaatatgt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3188993 |
gtagcatagaccaaaaagagaagaaatcacttggtgaacttgagcaagattttcttcaagcacttcaagtataaacaattatttcttctcattaatatgt |
3188894 |
T |
|
| Q |
230 |
gttctgttctgagcaatgtttaaatcagagtattctgtttattaatattgaataggcattttactatgagggaaaagcaactatgtcaaatgaagaattt |
329 |
Q |
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| T |
3188893 |
gttctgttctgagcaatgtttaaatcagagtattctgtttattaatattgaataggcattttactatgagggaaaagcaactatgtcaaatgaagaattt |
3188794 |
T |
|
| Q |
330 |
gataatctcaaagaagaactcatgtgggaaggaagcagcgttgtaatgctaagtatgcaccaaaaacttcagtgaatttatgtacctatgctact |
424 |
Q |
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| T |
3188793 |
gataatctcaaagaagaactcatgtgggaaggaagcagcgttgtaatgctaagtatgcaccaaaaacttcagtgaatttatgtacttatgttact |
3188699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 294 - 386
Target Start/End: Original strand, 42461454 - 42461546
Alignment:
| Q |
294 |
tatgagggaaaagcaactatgtcaaatgaagaatttgataatctcaaagaagaactcatgtgggaaggaagcagcgttgtaatgctaagtatg |
386 |
Q |
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| T |
42461454 |
tatgagggaaaggctattatgtcaaatgaagaatttgataatctcaaggaggaacttatgtgggaaggaagcagtgttgtcatgctaagtatg |
42461546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 42461047 - 42461127
Alignment:
| Q |
125 |
atattgtagcatagaccaaaaa---gagaagaaatcacttggtgaacttgagcaagattttcttcaagcacttcaagtata |
202 |
Q |
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||||||||||||||| |||||| ||||||||||| |||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
42461047 |
atattgtagcatagatcaaaaaaaggagaagaaatccgttggtgaactcgagcaagaatttcttcaagcactccaagtata |
42461127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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