View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_32 (Length: 412)
Name: NF0493_low_32
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_32 |
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| [»] scaffold0430 (1 HSPs) |
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| [»] scaffold1200 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 135 - 251
Target Start/End: Complemental strand, 5569739 - 5569623
Alignment:
| Q |
135 |
catgatgtgctatgaatatttaatgatgagaatgtaatgagttatagttgagttagttaatgatttgtaaatgaagcgctgtttaactaagtgtaaattg |
234 |
Q |
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| T |
5569739 |
catgatgtgctatgaatatttaatgatgagaatgtaatgagttatagttgagttagttaatgatttgtaaatgaagcgttgtttaactaagtgtaaattg |
5569640 |
T |
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| Q |
235 |
tgaagtgatgtgcttaa |
251 |
Q |
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| T |
5569639 |
tgaagtgatgtgattaa |
5569623 |
T |
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Target: scaffold0430 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 9227 - 9310
Alignment:
| Q |
154 |
ttaatgatgagaatgtaatgagttatagttgagttagttaatgatttgtaaatgaagcgctgtttaactaagtgtaaattgtgaa |
238 |
Q |
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| T |
9227 |
ttaatgatgagaatgtgatgcgtaatagttgagttagttaatgatatgtgaa-gaagaattgtttaactaagtgtaaattgtgaa |
9310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1200 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1200
Description:
Target: scaffold1200; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 1769 - 1817
Alignment:
| Q |
149 |
aatatttaatgatgagaatgtaatgagttatagttgagttagttaatga |
197 |
Q |
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| T |
1769 |
aatatttaatgatgagaatgtgatgagtaatacttgagttagttaatga |
1817 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 10290342 - 10290304
Alignment:
| Q |
126 |
atgatgtaacatgatgtgctatgaatatttaatgatgag |
164 |
Q |
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| T |
10290342 |
atgatgtaacatgatgtgctatgaatattcaatgatgag |
10290304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 11455916 - 11455833
Alignment:
| Q |
155 |
taatgatgagaatgtaatgagttatagttgagttagttaatgatttgtaaatgaagcgctgtttaactaagtgtaaattgtgaa |
238 |
Q |
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| T |
11455916 |
taatgatgtgaatgtgatgagtaatgtttgagctagttaatgatatgtgaatgacacattgtttaacaaagtgtaaattgtgaa |
11455833 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 10286394 - 10286356
Alignment:
| Q |
126 |
atgatgtaacatgatgtgctatgaatatttaatgatgag |
164 |
Q |
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| T |
10286394 |
atgatgtaacatgatgtgctatgattattcaatgatgag |
10286356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 16222075 - 16222127
Alignment:
| Q |
12 |
agagattaggatgactagtaattgaattatgattggttatgaaatgaattgtg |
64 |
Q |
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| T |
16222075 |
agagattagaatgactagtaatggacttgtaattggttatgaaatgaattgtg |
16222127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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