View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_34 (Length: 411)
Name: NF0493_low_34
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 103 - 376
Target Start/End: Complemental strand, 41697333 - 41697074
Alignment:
| Q |
103 |
ttttgcttttctggtggttaccataatacatgtattgacttgtttgaatgacttggtcgttaaggatttgatgttattcagatagaatttagttgcataa |
202 |
Q |
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| T |
41697333 |
ttttgcttttcttgtggttaccataatacatgtattga-------------cttggttgttaaggatttgatgttattcggatagaatttagttgcataa |
41697247 |
T |
|
| Q |
203 |
cttttcaaaataaaggggtttaatcggannnnnnnnnnngcaaacacacctaacaaagtactctctggtgaagtaaataagatagtaacaataaaatcta |
302 |
Q |
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| T |
41697246 |
cttttcaaaataaaggggtttaatcggatttttttttttgcaaacacacctaacaaagtattctctggtgaagtaaataagatagtaacaatacaatcta |
41697147 |
T |
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| Q |
303 |
tttaagattttaatttaccattgtaattcttaattagacttaagttttatatgtttttgtttttgataggttca |
376 |
Q |
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| T |
41697146 |
tttaaga-tttaatttaccattgtaattcttaattagacttaagttttatatgtttttgtttttgataggttca |
41697074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 246 - 376
Target Start/End: Complemental strand, 41693365 - 41693235
Alignment:
| Q |
246 |
acacacctaacaaagtactctctggtgaagtaaataagatagtaacaataaaatctatttaagattttaatttaccattgtaattcttaattagacttaa |
345 |
Q |
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|||||||||||||||||||||||| || ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| |||| |||||||| ||| | |
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| T |
41693365 |
acacacctaacaaagtactctctgatggagtaaataagagagtaataatacaatctatttaagattttcatttaccattgcaatttttaattaggcttta |
41693266 |
T |
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| Q |
346 |
gttttatatgtttttgtttttgataggttca |
376 |
Q |
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| T |
41693265 |
attttatatatttttgttttggacaggttca |
41693235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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