View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_36 (Length: 399)
Name: NF0493_low_36
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 64 - 390
Target Start/End: Original strand, 40827917 - 40828246
Alignment:
| Q |
64 |
gacatcacatattaatgccttacacgtgatgatgatggttgttaatgatatacttctaattatgtagcagctagctctaccctctaacgatctaattctg |
163 |
Q |
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| T |
40827917 |
gacatcacatattaatgccttacacgtgatgatgatggttgttaatgatatacttctaattatgtagcagctagctctaccctctaacgatctaattctg |
40828016 |
T |
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| Q |
164 |
gaaactcacctattttctttatagataataagttacattctacgtattaatgtctttcacatcacatattactcaaaaatagtgtaaagttgaggtttgg |
263 |
Q |
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| T |
40828017 |
gaaactcacctattttctttatagataataagttacattctacgtattaatgtctttcacatcacatattactcaaaaatagtgtaaagttgaggtttgg |
40828116 |
T |
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| Q |
264 |
tttccttgaactgaaaaaatgtattctaaacaaaaaaggcaagatagaaactattcaagtgtgtgatcaaaagttccattcaca---ctttttcaaatca |
360 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40828117 |
tttccttgaactgaaaaaatgtattctcaacaaaaaaggcaagatagaaactattcaagtgtgtgatcaaaagttccattcacacttctttttcaaatca |
40828216 |
T |
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| Q |
361 |
taaactagttcatgactctttgagaataat |
390 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40828217 |
taaactagttcatgactctttgagaataat |
40828246 |
T |
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