View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_38 (Length: 389)
Name: NF0493_low_38
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 29 - 371
Target Start/End: Complemental strand, 2994024 - 2993687
Alignment:
| Q |
29 |
atccagttcatggtattacagcaaccatatagtcgacatataaaacagtaataattttgactaaataaatacaagaaacatcctaagctaattaa----g |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| | |
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| T |
2994024 |
atccagttcatggtattacagcaaccatatagtcgacatataaaacagtaataattttcactaaata----caagaaacatcctaagctaattaattaag |
2993929 |
T |
|
| Q |
125 |
ttggtgaaaaacatgtaatggaatggaacattctaaattctcttttgcttcatacacgtcaaattgttggcacctgaaggggtcaacaaagagtaatcaa |
224 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2993928 |
ttggtgaaaaacatgtaatggaa-----cattctaaattctcttttgcttcatacacgtcaaattgttggcacctgaaggggtcaacaaagagtaatcaa |
2993834 |
T |
|
| Q |
225 |
agtgggatttgtcaattttcgttctaaaacaaccgacacaggcctccagcttcttgtttgtttgtttaattaacgcgcaaatcccactgtccaccaacca |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2993833 |
agtgggatttgtcaattttcgttctaaaacaaccgacacaagtctccagcttcttgtttgtttgtttaattaacgcgcaaatcccactgtccaccaacca |
2993734 |
T |
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| Q |
325 |
ttttatcatccgcactagacggcaggccaggccaggcacataactca |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2993733 |
ttttatcatccgcactagacggcaggccaggccaggcacataactca |
2993687 |
T |
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