View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_low_39 (Length: 389)
Name: NF0493_low_39
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 360
Target Start/End: Complemental strand, 14428017 - 14427667
Alignment:
| Q |
10 |
attatactcttgtcactctattctcgttgcctcactctattattacttcttcactttcttagcagtgagtagtagaaaaaacattaccaccgatgaattt |
109 |
Q |
| |
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|||||||||||| | || |||||| ||||||| | ||||||||||||||||||| |||||| |||||||||| |||||| | ||||||||||||||| |
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| T |
14428017 |
attatactcttggctctttattctttctgcctcaatttattattacttcttcacttgcttagctgtgagtagtaagaaaaacctaaccaccgatgaattt |
14427918 |
T |
|
| Q |
110 |
tcacttcttgcattcaaatcatcaattaccttagacccttatcatatgcttagtaattggtcaatttcctcttctgcttcctctttttcttcatgcaatt |
209 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||||| ||||||||||||| |
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| T |
14427917 |
tcacttcttgcattcaaatcctcaattaccttagatccttatcatattcttagtaattggtcaatttccacttctgcttcttctttctcttcatgcaatt |
14427818 |
T |
|
| Q |
210 |
gggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttaaaggtatcatttctcctcaattgggaaatct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| |
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| T |
14427817 |
gggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttgaaggtaacatttctcctcaattaggaaatct |
14427718 |
T |
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| Q |
310 |
ctctttccttgctgttcttgatctacatggcaatagttttcatggtgagtt |
360 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
14427717 |
ctctttccttgttgttcttgatctacatggcaatagtttccatggtgagtt |
14427667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 41 - 360
Target Start/End: Complemental strand, 5084204 - 5083885
Alignment:
| Q |
41 |
tcactctattattacttcttcactttcttagcagtgagtagtagaaaaaacattaccaccgatgaattttcacttcttgcattcaaatcatcaattacct |
140 |
Q |
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| T |
5084204 |
tcactctattattatttcttcacttgcttagctataagtagtaaaaaaaacatcaccacagatgaattttcacttcttgcattcaaatcctcaattacct |
5084105 |
T |
|
| Q |
141 |
tagacccttatcatatgcttagtaattggtcaatttcctcttctgcttcctctttttcttcatgcaattgggttggtgttacttgtgatgaacatcatgg |
240 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5084104 |
tagatccttatcatatgcttagaaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtgatgaacatcatgg |
5084005 |
T |
|
| Q |
241 |
aagagtaaatgcattgaatcttagtaacatgggccttaaaggtatcatttctcctcaattgggaaatctctctttccttgctgttcttgatctacatggc |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
5084004 |
aagagtaaatgcattgaatcttagtaacatggaccttgaaggtacaatttcccctcaattgggaaatctctctttccttgtatttcttgatctacaagga |
5083905 |
T |
|
| Q |
341 |
aatagttttcatggtgagtt |
360 |
Q |
| |
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|||||||| ||||||||||| |
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| T |
5083904 |
aatagtttccatggtgagtt |
5083885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 360
Target Start/End: Original strand, 5093840 - 5094183
Alignment:
| Q |
15 |
actcttgtcactctattctcgttgcctcactctattattacttcttcactttcttagcagtgagtagtagaaaaaacattaccaccgatgaattttcact |
114 |
Q |
| |
|
||||||| | || ||||||| ||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||| | ||||||||||||||||| |
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| T |
5093840 |
actcttggctctgtattctctctgcttcactctattattacttcttcacttg-ttagttgtgagtagtaaaaaaaacataaa-accgatgaattttcact |
5093937 |
T |
|
| Q |
115 |
tcttgcattcaaatcatcaattaccttagacccttatcatatgcttagtaattggtcaatttcctcttctgcttcctctttttcttcatgcaattgggtt |
214 |
Q |
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||||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |
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| T |
5093938 |
tcttgcattcaaatcctcaataaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttgtcttcatgcaattgggtt |
5094037 |
T |
|
| Q |
215 |
ggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttaaaggtatcatttctcctcaattgggaaatctctctt |
314 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| |||| |
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| T |
5094038 |
ggtgttacttgtgatgaacaccatggaagagtaaatgcattgaatcttagtagcatgggccttgaaggtacaatttctcctcaattgggaaatctttctt |
5094137 |
T |
|
| Q |
315 |
tccttgctgttcttgatctacatggcaatagttttcatggtgagtt |
360 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||| ||||||||||| |
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| T |
5094138 |
tccttattgttcttgatttacagggcaatagtttccatggtgagtt |
5094183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 28 - 360
Target Start/End: Original strand, 5110857 - 5111186
Alignment:
| Q |
28 |
tattctcgttgcctcactctattattacttcttcactttcttagcagtgagtagtagaaaaaacattaccaccgatgaattttcacttcttgcattcaaa |
127 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||| |||||| ||| | || ||| ||| ||||| ||||||||| ||||||||||||||||| |
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| T |
5110857 |
tattctctctgcctcactctattattacctcttcacttgcttagctatgatttcta---aaaccatcaccacagatgaatttgcacttcttgcattcaaa |
5110953 |
T |
|
| Q |
128 |
tcatcaattaccttagacccttatcatatgcttagtaattggtcaatttcctcttctgcttcctctttttcttcatgcaattgggttggtgttacttgtg |
227 |
Q |
| |
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|| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
5110954 |
tcctcaattaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgtg |
5111053 |
T |
|
| Q |
228 |
atgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttaaaggtatcatttctcctcaattgggaaatctctctttccttgctgttct |
327 |
Q |
| |
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||||||||||||||||||| ||||||||| |||||| |||||||| |||| |||||| ||||||||||||||||||||||| |||||||||| |||||| |
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| T |
5111054 |
atgaacatcatggaagagtgaatgcattggatcttaataacatggaccttgaaggtacaatttctcctcaattgggaaatctttctttccttgttgttct |
5111153 |
T |
|
| Q |
328 |
tgatctacatggcaatagttttcatggtgagtt |
360 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||| |
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|
| T |
5111154 |
tgatttacaaggcaatagtttctatggtgagtt |
5111186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 16872283 - 16872553
Alignment:
| Q |
14 |
tactcttgtcactctattctcgttgcctcactctattattacttcttcactttcttagcagtgagtagtagaaaaaacattaccaccgatgaattttcac |
113 |
Q |
| |
|
|||||||||| || | ||||| || |||||| |||||||||||||||||| |||||| |||||| || |||||||| |||| ||||||||||||| |
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| T |
16872283 |
tactcttgtctctatgttctctatgtctcactgcattattacttcttcacttgcttagctatgagtactaacaaaaacatcaccatagatgaattttcac |
16872382 |
T |
|
| Q |
114 |
ttcttgcattcaaatcatcaattaccttagacccttatcatatgcttag---taattggtcaatttcctcttctgcttcctctttttcttcatgcaattg |
210 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| | |||||| |||||||||||| ||||||||| || ||||| || ||||| ||||| |
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| T |
16872383 |
ttcttgcattcaaatcctctattaccttagacccttatcacaagcttagtaataattggtcaatctcctcttctact---tctttctcatcatgtaattg |
16872479 |
T |
|
| Q |
211 |
ggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttaaaggta |
284 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
16872480 |
ggttggtgtcacttgtgatgagcatcatggaagagtaaaggcattgaatcttagtaatatgggacttgaaggta |
16872553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 16873377 - 16873444
Alignment:
| Q |
294 |
ctcaattgggaaatctctctttccttgctgttcttgatctacatggcaatagttttcatggtgagttt |
361 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
16873377 |
ctcaattgggaaatctctctttccttgttattcttgacctacaaggcaatagtttccatggtgagttt |
16873444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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