View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_4 (Length: 596)
Name: NF0493_low_4
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_4 |
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| [»] scaffold0361 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 246 - 560
Target Start/End: Original strand, 4946892 - 4947206
Alignment:
| Q |
246 |
cttgttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatattatttcataaataaacaatt |
345 |
Q |
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| T |
4946892 |
cttgttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatattatttcataaataaacaatt |
4946991 |
T |
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| Q |
346 |
tcataaaatacttgagacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctctaatgatgtgctatgtgattg |
445 |
Q |
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| T |
4946992 |
tcataaaatacttgagacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctctaatgatgtgctatgtgattg |
4947091 |
T |
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| Q |
446 |
tttgaaaagtaaacaatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttcttttaagtcaattgtct |
545 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4947092 |
tttgaaaagtaaacaatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttcttttaagtcaattgtct |
4947191 |
T |
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| Q |
546 |
ccttagccgcctttg |
560 |
Q |
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| T |
4947192 |
ccttagccacctttg |
4947206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 30 - 167
Target Start/End: Original strand, 4946676 - 4946813
Alignment:
| Q |
30 |
gttttatactttgatcttttgattaattggaaggattaaataggaggatattaatttactcaaaacttttgacacaatgtagaagataatcagtttataa |
129 |
Q |
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| T |
4946676 |
gttttatactttgatcttttgattaattggaaggattaaataggaggatattaatttactcaaaacttttgacagaatgtagaagataatcagtttataa |
4946775 |
T |
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| Q |
130 |
atgttgagcagtgttattcagtacgaataataaacctc |
167 |
Q |
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| T |
4946776 |
atgttgagcagtgttattcagtacgaataataaacctc |
4946813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 250 - 560
Target Start/End: Original strand, 11568 - 11879
Alignment:
| Q |
250 |
ttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatattatttcataaataaacaatttcat |
349 |
Q |
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| T |
11568 |
ttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatactatttcataaataaacaatttcat |
11667 |
T |
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| Q |
350 |
aaaatacttgagacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctctaatgatgtgctatgtgattgtttg |
449 |
Q |
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| T |
11668 |
aaaatacttgaaacacaagttttaattcaatattacctatcccctttctcttttattaaaactttaataaacctctaatggtgtgctatgtgattgtttg |
11767 |
T |
|
| Q |
450 |
aaaagtaaacaatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttc-ttttaagtcaattgtctcct |
548 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11768 |
aaaagtaaaccatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaattgtctcct |
11867 |
T |
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| Q |
549 |
tagccgcctttg |
560 |
Q |
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|||| ||||||| |
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| T |
11868 |
tagctgcctttg |
11879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 30 - 167
Target Start/End: Original strand, 11346 - 11483
Alignment:
| Q |
30 |
gttttatactttgatcttttgattaattggaaggattaaataggaggatattaatttactcaaaacttttgacacaatgtagaagataatcagtttataa |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| ||||| |||||| |
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| T |
11346 |
gttttatactttgatcttttgattaattggaaggattaaataggaggatattaatttactcaagacttttgccagaatgtagaagatgatcagcttataa |
11445 |
T |
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| Q |
130 |
atgttgagcagtgttattcagtacgaataataaacctc |
167 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |
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| T |
11446 |
atattgagcagtgttattcagtacgaataataaacctc |
11483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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