View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_40 (Length: 387)
Name: NF0493_low_40
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 31719639 - 31719958
Alignment:
| Q |
17 |
atgaacacaacaaattataactcataactagcgtagattctttcaacaaatttctccatgtgcatagtagctaaaagttgacactattgttaaaaatatt |
116 |
Q |
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| T |
31719639 |
atgaacacaacaaattataactcataactagcgtagattctttcaacaaatttctccatgtgcatagtagctaaaagttgacactattgttaaaaatatt |
31719738 |
T |
|
| Q |
117 |
agatggttactcaaacatttggagacataccattttgtcctactggctacctcataaagcttgaggcaaaacaagaaattcatgagatgaatatagacgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719739 |
agatggttactcaaacatttggagacataccattttgtcctactggctacctcataaagcttgaggcaaaacaagaaattcatgagatgaatatagacgt |
31719838 |
T |
|
| Q |
217 |
ttaattgctgctattcatgctgggaagcctaaagattgaatagaggaatgtctcaaagtggaacctgataaagtgagatgtctaagtttaagtcccacac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719839 |
ttaattgctgctattcatgctgggaagcctaaagattgaatagaggaatgtctcaaagtggaacctgataaagtgagatgtctaagtttaagtcccacac |
31719938 |
T |
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| Q |
317 |
cgttcaatagtgttgtaaat |
336 |
Q |
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||||||| |||||||||||| |
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| T |
31719939 |
cgttcaacagtgttgtaaat |
31719958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 225 - 309
Target Start/End: Complemental strand, 31011773 - 31011689
Alignment:
| Q |
225 |
tgctattcatgctgggaagcctaaagattgaatagaggaatgtctcaaagtggaacctgataaagtgagatgtctaagtttaagt |
309 |
Q |
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| T |
31011773 |
tgctattcatgctgggaagcctaaaggtggaatagtggaatgtctcaaagtggagcctgataaagtgagacgtctaagtttaagt |
31011689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 225 - 309
Target Start/End: Original strand, 31709549 - 31709633
Alignment:
| Q |
225 |
tgctattcatgctgggaagcctaaagattgaatagaggaatgtctcaaagtggaacctgataaagtgagatgtctaagtttaagt |
309 |
Q |
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|||||| ||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
31709549 |
tgctatacatgctgggaagcctaaaggtggaatagtggaatgtctcaaagtggagcctgataaagtgagacgtctaagtttaagt |
31709633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 31012221 - 31012172
Alignment:
| Q |
110 |
aaatattagatggttactcaaacatttggagacataccattttgtcctac |
159 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31012221 |
aaattttagatggttactcaaacatttggagacatactgttttgtcctac |
31012172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 31709112 - 31709156
Alignment:
| Q |
115 |
ttagatggttactcaaacatttggagacataccattttgtcctac |
159 |
Q |
| |
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| T |
31709112 |
ttagatggttactcaaacatttggagacatactgttttgtcctac |
31709156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 46767966 - 46767914
Alignment:
| Q |
20 |
aacacaacaaattataactcataactagcgtagattctttcaacaaatttctc |
72 |
Q |
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|||||||||||||| || |||||||| |||| |||||||| ||||||||||| |
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| T |
46767966 |
aacacaacaaattaaaattcataactgacgtaaattctttcgacaaatttctc |
46767914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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