View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_45 (Length: 378)
Name: NF0493_low_45
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 30 - 281
Target Start/End: Original strand, 42190181 - 42190434
Alignment:
| Q |
30 |
acaagtaacatttaaaacaggtgaaaaaatatgtacagatgcattgcatggaattcgatccatataatttgaaatcacgataagtctct-aagtttggct |
128 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |
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| T |
42190181 |
acaagtaacatttaaaacaggtgaaaaa-tatgtacagatgcattgcatggaattcgatccatagaatttgaaatcatgataagtctcttaagtttggct |
42190279 |
T |
|
| Q |
129 |
tcatgacagccatagagtgactttaggtatgaaactcaaatgtgataagcttttaagtccaaaccttctacatttttaaattggtaaagttgattaggct |
228 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
42190280 |
tcatgaaagccatagagtgactttaggtatgaaactcaaatgtgataagcttttaagtccaaaccttctaaagttttaaattggtaaagttgattaggct |
42190379 |
T |
|
| Q |
229 |
gaaaac--tgtgaccaaaataaggtaggtataagtaatgaacttagattactcct |
281 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||||| ||||| |||| ||||| |
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| T |
42190380 |
gaaaactatgtgaccaaaataaggtatgtataagtaattaacttcgatttctcct |
42190434 |
T |
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