View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_48 (Length: 374)
Name: NF0493_low_48
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 127 - 346
Target Start/End: Original strand, 35903229 - 35903449
Alignment:
| Q |
127 |
tcctactttattttctgtgaacaactaaatatcctactagtcatctacacaaactaaaaattgaaaacgnnnnnnnggatgaaaaaagttttaaagctta |
226 |
Q |
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| T |
35903229 |
tcctactttattttctgtgaacaactaaatatcctactagtcatctacacaaaataaaaattgaaaacgtttttttggatgaaaaaagttttaaagctta |
35903328 |
T |
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| Q |
227 |
aaacgtgaaaccctaagtgttcaattgatgta-nnnnnnnagggccatagacctgaggcatgcaccccacactgacattgtcaaactaggccaaacatta |
325 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35903329 |
aaacgtgaaaccctaagtgttcaattgatgtattttttttagggccatagacctgaggcatgcaccccacactgacattgtcaaactaggccaaacatta |
35903428 |
T |
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| Q |
326 |
tcccaaaggtagcaagtccat |
346 |
Q |
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||||||||||||||||||||| |
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| T |
35903429 |
tcccaaaggtagcaagtccat |
35903449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 35903114 - 35903150
Alignment:
| Q |
12 |
agagaagaccttaagcaagttttttagaatattgcat |
48 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
35903114 |
agagaagaccttaagcaagttttttagaatattgcat |
35903150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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