View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_low_5 (Length: 580)

Name: NF0493_low_5
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_low_5
NF0493_low_5
[»] chr7 (6 HSPs)
chr7 (285-531)||(30663036-30663284)
chr7 (32-197)||(30665767-30665930)
chr7 (236-288)||(30663309-30663362)
chr7 (304-374)||(43344672-43344742)
chr7 (304-374)||(1819797-1819867)
chr7 (391-425)||(1819882-1819916)
[»] chr6 (2 HSPs)
chr6 (304-425)||(31611499-31611619)
chr6 (391-425)||(34092963-34092997)
[»] chr5 (1 HSPs)
chr5 (324-425)||(8987756-8987856)
[»] scaffold0620 (1 HSPs)
scaffold0620 (391-425)||(8297-8331)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 8e-84; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 285 - 531
Target Start/End: Complemental strand, 30663284 - 30663036
Alignment:
Q  285 accaaaaccaatatgacggctaaaacaaacttcattgcaaacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctccnnnnnnnn-- 382  Q
    |||||||||||||| || ||||||||||||| ||| ||||||||||||   |||| ||| |||||||||| |||||||||||||| ||                
T  30663284 accaaaaccaatatcacagctaaaacaaactccatagcaaacaaccactaaaaacaaaatccataagcacccatcgccgctactcactaaaaaaaaaaaa 30663185  T
Q  383 caactcttgcaatcaaacattctcttcacctccccatggttaatttttaaatttttcttatcatattctttagattccctaattttctttacctccattt 482  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30663184 caattcttgcaatcaaacattctcttcacctccccatggttaatttttaaatttttcttatcatattctttagattccctaattttctttacctccattt 30663085  T
Q  483 cctattcctttgtctccctctttctttcatcttccaagtcattcatctc 531  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30663084 cctattcctttgtctccctctttctttcatcttccaagtcattcatctc 30663036  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 30665930 - 30665767
Alignment:
Q  32 ttccatgacagagacatggatgttggcaaaataaggaaagatagaaaccaacggcttcaaagacaagtaatacgaaccaaaagggaaatttgaaaatcca 131  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||     |||||||||||||||||||||||||||||| ||    
T  30665930 ttccatgagagagacatggatgttggcaaaataaggaaagatagaaaccaatggcttcaaag-----taatacgaaccaaaagggaaatttgaaaattca 30665836  T
Q  132 caatctgaaaatcaacgaaacttttagcatnnnnnnnnt---atcaacccatccatttactaatatcac 197  Q
    |||||||||||||||| |||||||||||||        |   |||||||||||||||||||||||||||    
T  30665835 caatctgaaaatcaacaaaacttttagcataaaaaaaataaaatcaacccatccatttactaatatcac 30665767  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 30663362 - 30663309
Alignment:
Q  236 acccaaaataaacaaagacacgaaaaacactcatcacctccctaa-acctacca 288  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  30663362 acccaaaataaacaaagacacgaaaagcactcatcacctccctaagacctacca 30663309  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 43344672 - 43344742
Alignment:
Q  304 ctaaaacaaacttcattgcaaacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctcc 374  Q
    |||||||||||| ||| |  ||||||||||  |||||||| | |||||||| |||||||||||||||||||    
T  43344672 ctaaaacaaactccatcgtgaacaaccaccaaaaacgaaatctataagcacccatcgccgctactcgctcc 43344742  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 1819797 - 1819867
Alignment:
Q  304 ctaaaacaaacttcattgcaaacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctcc 374  Q
    |||||||||||| ||  |||||||||||  |||||||||| ||||||  || |||||||||||||| ||||    
T  1819797 ctaaaacaaactccaacgcaaacaaccattggaaacgaaatccataaatacccatcgccgctactcactcc 1819867  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Original strand, 1819882 - 1819916
Alignment:
Q  391 gcaatcaaacattctcttcacctccccatggttaa 425  Q
    |||||||||||| ||||||||||||||||||||||    
T  1819882 gcaatcaaacatcctcttcacctccccatggttaa 1819916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 425
Target Start/End: Complemental strand, 31611619 - 31611499
Alignment:
Q  304 ctaaaacaaacttcattgcaaacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctccnnnnnnnncaactcttgcaatcaaacatt 403  Q
    |||||||||||| |||  | ||||||||  |||||||||| |||||||||  ||| |||||||||| ||||        || | || ||||||||||||     
T  31611619 ctaaaacaaactccatcacgaacaaccaatggaaacgaaatccataagcatccattgccgctactcactccaaaaaaa-cacccctcgcaatcaaacatc 31611521  T
Q  404 ctcttcacctccccatggttaa 425  Q
    ||||||||||||||||||||||    
T  31611520 ctcttcacctccccatggttaa 31611499  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Complemental strand, 34092997 - 34092963
Alignment:
Q  391 gcaatcaaacattctcttcacctccccatggttaa 425  Q
    |||||||||||| ||||||||||||||||||||||    
T  34092997 gcaatcaaacatcctcttcacctccccatggttaa 34092963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 425
Target Start/End: Original strand, 8987756 - 8987856
Alignment:
Q  324 aacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctccnnnnnnnncaactcttgcaatcaaacattctcttcacctccccatggtt 423  Q
    |||||||||  ||||||||| |||||| |||||||||||||||||| ||||        || |||  |||||||||||| ||||||| ||||||||||||    
T  8987756 aacaaccacttgaaacgaaatccataaccactcatcgccgctactcactcc-aaagaaacacctcgcgcaatcaaacatcctcttcatctccccatggtt 8987854  T
Q  424 aa 425  Q
    ||    
T  8987855 aa 8987856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Complemental strand, 8331 - 8297
Alignment:
Q  391 gcaatcaaacattctcttcacctccccatggttaa 425  Q
    |||||||||||| ||||||||||||||||||||||    
T  8331 gcaatcaaacatcctcttcacctccccatggttaa 8297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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